Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   S101359_RS01935 Genome accession   NZ_CP021500
Coordinates   374972..375370 (-) Length   132 a.a.
NCBI ID   WP_010787604.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 369972..380370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS01905 (S101359_00375) - 370480..371616 (+) 1137 WP_088116473.1 zinc-dependent alcohol dehydrogenase -
  S101359_RS01910 (S101359_00376) - 371629..372084 (+) 456 WP_088116474.1 RDD family protein -
  S101359_RS01915 (S101359_00377) - 372169..372498 (+) 330 WP_088116475.1 YckD family protein -
  S101359_RS01925 (S101359_00378) - 372701..373429 (+) 729 WP_088116476.1 AAA family ATPase -
  S101359_RS01930 (S101359_00379) - 373499..374935 (+) 1437 WP_088116477.1 family 1 glycosylhydrolase -
  S101359_RS01935 (S101359_00380) nin/comJ 374972..375370 (-) 399 WP_010787604.1 competence protein ComJ Regulator
  S101359_RS01940 (S101359_00381) nucA/comI 375389..375826 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  S101359_RS01945 (S101359_00382) - 376048..377751 (-) 1704 WP_208618322.1 methyl-accepting chemotaxis protein -
  S101359_RS01950 (S101359_00383) hxlB 377880..378437 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  S101359_RS01955 (S101359_00384) hxlA 378444..379076 (-) 633 WP_088116480.1 3-hexulose-6-phosphate synthase -
  S101359_RS01960 (S101359_00385) - 379294..379659 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14839.70 Da        Isoelectric Point: 4.7105

>NTDB_id=231260 S101359_RS01935 WP_010787604.1 374972..375370(-) (nin/comJ) [Bacillus atrophaeus strain SRCM101359]
MTNSWKPQELIISYHQFTIFQKNSKPPIIDWTDEAIEKGYAEADGAVSFEAQRNSKVFIILRLNSSDIVESYEKKATVPF
HVSGDGINIESVMSKRLSFDLPKGQYVFTCYTVPAEASDLHADTYIIDAAAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=231260 S101359_RS01935 WP_010787604.1 374972..375370(-) (nin/comJ) [Bacillus atrophaeus strain SRCM101359]
TTGACAAATTCATGGAAACCGCAAGAGCTCATTATCTCATATCATCAATTTACCATTTTTCAAAAGAATTCAAAGCCGCC
TATAATAGATTGGACGGATGAAGCGATTGAAAAAGGATATGCAGAGGCCGACGGAGCCGTTTCATTCGAAGCGCAGAGAA
ACTCCAAAGTGTTTATTATCTTGCGTCTCAACAGCTCAGACATAGTTGAATCCTATGAAAAAAAAGCAACTGTTCCTTTT
CATGTCTCAGGGGACGGGATAAATATAGAAAGTGTCATGTCAAAGAGGCTGTCATTTGATTTGCCGAAAGGTCAATACGT
CTTCACTTGCTATACTGTTCCCGCTGAAGCGTCAGACCTGCATGCAGATACATATATTATTGACGCTGCTGCACAATAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.099

99.242

0.765

Multiple sequence alignment