Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXB56_RS09355 Genome accession   NZ_CP027205
Coordinates   1206200..1206937 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WCHEC025943     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201200..1211937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB56_RS09320 (CXB56_09565) yfiL 1201358..1201723 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CXB56_RS09325 (CXB56_09570) aroF 1201933..1203003 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXB56_RS09330 (CXB56_09575) tyrA 1203014..1204135 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXB56_RS09335 (CXB56_09580) pheA 1204178..1205338 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXB56_RS09340 (CXB56_09585) pheL 1205437..1205484 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  CXB56_RS09345 (CXB56_09590) raiA 1205588..1205929 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXB56_RS09355 (CXB56_09600) comL 1206200..1206937 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXB56_RS09360 (CXB56_09605) rluD 1207072..1208052 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXB56_RS09365 (CXB56_09610) yfiH 1208049..1208780 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  CXB56_RS09370 (CXB56_09615) clpC 1208910..1211483 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=231248 CXB56_RS09355 WP_000197686.1 1206200..1206937(-) (comL) [Escherichia coli strain WCHEC025943]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=231248 CXB56_RS09355 WP_000197686.1 1206200..1206937(-) (comL) [Escherichia coli strain WCHEC025943]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment