Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   S101444_RS19235 Genome accession   NZ_CP021498
Coordinates   3623424..3623543 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3618424..3628543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS19210 (S101444_03823) albG 3618588..3619289 (+) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  S101444_RS19215 (S101444_03824) ywhL 3619295..3620671 (-) 1377 WP_014481223.1 YncE family protein -
  S101444_RS19220 (S101444_03825) ywhK 3620710..3622065 (-) 1356 WP_049140945.1 YncE family protein -
  S101444_RS21935 - 3622062..3622292 (-) 231 Protein_3745 hypothetical protein -
  S101444_RS19230 (S101444_03826) rapF 3622295..3623440 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  S101444_RS19235 (S101444_03827) phrF 3623424..3623543 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  S101444_RS21805 - 3623657..3624105 (+) 449 Protein_3748 YbaK/EbsC family protein -
  S101444_RS19250 (S101444_03829) speB 3624137..3625009 (-) 873 WP_003227545.1 agmatinase -
  S101444_RS19255 (S101444_03830) speE 3625070..3625900 (-) 831 WP_003227543.1 spermidine synthase -
  S101444_RS19260 (S101444_03831) pbpG 3626103..3628178 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=231169 S101444_RS19235 WP_009968329.1 3623424..3623543(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=231169 S101444_RS19235 WP_009968329.1 3623424..3623543(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment