Detailed information NTG0023114

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GBS_RS10970
• Genome accession: NC_004368
• Coordinates: 2188728..2189837 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264863.1
• Uniprot ID: Q8DWQ8
• Organism: Streptococcus agalactiae NEM316
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2183728..2194837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBS_RS10945 (gbs2110)	-	2184100..2184939 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
GBS_RS10950 (gbs2111)	pgsA	2184939..2185481 (-)	543	WP_000976003.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GBS_RS10955 (gbs2112)	yfmH	2185604..2186887 (-)	1284	WP_000217754.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GBS_RS10960 (gbs2113)	yfmF	2186889..2188133 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GBS_RS10965 (gbs2114)	yaaA	2188372..2188725 (+)	354	WP_000384871.1	S4 domain-containing protein YaaA	-
GBS_RS10970 (gbs2115)	recF	2188728..2189837 (+)	1110	WP_000264863.1	DNA replication/repair protein RecF	Machinery gene
GBS_RS10975 (gbs2116)	-	2189849..2190715 (-)	867	WP_000398683.1	GRP family sugar transporter	-
GBS_RS10980 (gbs2117)	-	2190771..2191433 (-)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
GBS_RS10985 (gbs2118)	guaB	2191508..2192989 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
GBS_RS10990 (gbs2119)	-	2193146..2193631 (-)	486	WP_001034427.1	arginine repressor	-
GBS_RS10995 (gbs2120)	-	2193641..2194321 (-)	681	WP_000628851.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42526.35 Da
• Isoelectric Point: 7.3132

>NTDB_id=23114 GBS_RS10970 WP_000264863.1 2188728..2189837(+) (recF) [Streptococcus agalactiae NEM316]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFASQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=23114 GBS_RS10970 WP_000264863.1 2188728..2189837(+) (recF) [Streptococcus agalactiae NEM316]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGCTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q8DWQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.085	98.374	0.621
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444