Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCS05_RS00045 Genome accession   NZ_CP021456
Coordinates   10089..10655 (+) Length   188 a.a.
NCBI ID   WP_043023113.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain ZLB004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5089..15655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCS05_RS00035 (CCS05_00035) gyrA 6638..9172 (+) 2535 WP_110139197.1 DNA gyrase subunit A -
  CCS05_RS00040 (CCS05_00040) rpsF 9759..10055 (+) 297 WP_043023114.1 30S ribosomal protein S6 -
  CCS05_RS00045 (CCS05_00045) ssb 10089..10655 (+) 567 WP_043023113.1 single-stranded DNA-binding protein Machinery gene
  CCS05_RS00050 (CCS05_00050) rpsR 10684..10920 (+) 237 WP_011666824.1 30S ribosomal protein S18 -
  CCS05_RS00055 (CCS05_00055) - 11067..12254 (-) 1188 WP_097546431.1 metal-dependent hydrolase family protein -
  CCS05_RS00060 (CCS05_00060) - 12285..13892 (-) 1608 WP_085762599.1 peptide ABC transporter substrate-binding protein -
  CCS05_RS00065 (CCS05_00065) - 14501..15358 (+) 858 WP_225416770.1 D-alanyl-D-alanine carboxypeptidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20563.19 Da        Isoelectric Point: 4.9305

>NTDB_id=230881 CCS05_RS00045 WP_043023113.1 10089..10655(+) (ssb) [Levilactobacillus brevis strain ZLB004]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGNNNQ
NSHANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=230881 CCS05_RS00045 WP_043023113.1 10089..10655(+) (ssb) [Levilactobacillus brevis strain ZLB004]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACGCGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTATGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAACCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAATAACAATCAG
AACAGTCATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGTGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.383

100

0.564

Multiple sequence alignment