Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CCO03_RS11740 Genome accession   NZ_CP021455
Coordinates   2789050..2789451 (-) Length   133 a.a.
NCBI ID   WP_087281246.1    Uniprot ID   -
Organism   Comamonas serinivorans strain DSM 26136     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2784050..2794451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO03_RS11725 (CCO03_11725) - 2785916..2788138 (-) 2223 WP_087281240.1 methyl-accepting chemotaxis protein -
  CCO03_RS11730 (CCO03_11730) - 2788157..2788681 (-) 525 WP_087281242.1 chemotaxis protein CheW -
  CCO03_RS11735 (CCO03_11735) - 2788683..2789048 (-) 366 WP_087281244.1 response regulator -
  CCO03_RS11740 (CCO03_11740) pilG 2789050..2789451 (-) 402 WP_087281246.1 response regulator Regulator
  CCO03_RS11745 (CCO03_11745) thiD 2789643..2790575 (+) 933 WP_236903790.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CCO03_RS11750 (CCO03_11750) hemL 2790723..2792021 (+) 1299 WP_087281248.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CCO03_RS11755 (CCO03_11755) - 2792091..2793263 (+) 1173 WP_087281250.1 alpha-hydroxy acid oxidase -
  CCO03_RS11760 (CCO03_11760) - 2793531..2793890 (+) 360 WP_087281252.1 hypothetical protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14614.72 Da        Isoelectric Point: 6.9505

>NTDB_id=230867 CCO03_RS11740 WP_087281246.1 2789050..2789451(-) (pilG) [Comamonas serinivorans strain DSM 26136]
MSTQSSGLKVLVIDDSNTIRRSAEIFLKQGGHEVVLAEDGFDALSKISDYQPDLIFCDILMPRLDGYQTCAIIKRNDKFS
ATPVVMLSSKDGVFDKARGRMVGSQEYLTKPFTKDQLLQTVTRFSSGSISAVG

Nucleotide


Download         Length: 402 bp        

>NTDB_id=230867 CCO03_RS11740 WP_087281246.1 2789050..2789451(-) (pilG) [Comamonas serinivorans strain DSM 26136]
TTGAGCACTCAATCTTCCGGGCTCAAGGTTCTGGTCATTGACGACAGCAACACCATCCGCCGCAGCGCCGAGATTTTTCT
CAAGCAGGGCGGCCATGAGGTGGTGCTTGCCGAAGATGGTTTCGACGCCTTGTCCAAGATTTCGGATTACCAACCGGATC
TGATTTTTTGCGACATCCTCATGCCGCGTCTCGATGGGTATCAGACGTGCGCCATCATCAAACGCAACGACAAGTTTTCC
GCCACGCCTGTGGTCATGCTGTCGTCCAAGGACGGGGTGTTTGACAAGGCCCGTGGTCGCATGGTGGGCTCGCAGGAATA
CCTGACCAAGCCGTTCACCAAGGATCAGTTGTTGCAAACGGTGACCCGCTTCTCGTCGGGTTCGATTTCGGCGGTGGGTT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.524

94.737

0.564

Multiple sequence alignment