Detailed information NTG0230738

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BEI_RS08105
• Genome accession: NZ_CP021435
• Coordinates: 1704564..1705415 (-)
• Length: 283 a.a.
• NCBI ID: WP_097789040.1
• Uniprot ID: -
• Organism: Halomonas beimenensis strain NTU-111
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1699564..1710415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEI_RS08075 (BEI_1622)	-	1700162..1700539 (+)	378	WP_097789034.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
BEI_RS08080 (BEI_1623)	-	1700739..1701533 (-)	795	WP_097789035.1	helix-turn-helix domain-containing protein	-
BEI_RS08085 (BEI_1624)	-	1701892..1702164 (+)	273	WP_097789036.1	hypothetical protein	-
BEI_RS08090 (BEI_1625)	-	1702496..1703380 (-)	885	WP_227644647.1	DNA replication terminus site-binding protein	-
BEI_RS08095 (BEI_1626)	yacG	1703650..1703880 (-)	231	WP_097789038.1	DNA gyrase inhibitor YacG	-
BEI_RS08100 (BEI_1627)	coaE	1703933..1704562 (-)	630	WP_097789039.1	dephospho-CoA kinase	-
BEI_RS08105 (BEI_1628)	pilD	1704564..1705415 (-)	852	WP_097789040.1	prepilin peptidase	Machinery gene
BEI_RS08110 (BEI_1629)	nagZ	1705865..1706878 (+)	1014	WP_097789041.1	beta-N-acetylhexosaminidase	-
BEI_RS08115 (BEI_1630)	-	1706915..1707490 (+)	576	WP_097789042.1	hypoxanthine-guanine phosphoribosyltransferase	-
BEI_RS08120 (BEI_1631)	-	1707722..1709413 (-)	1692	WP_097789043.1	AMP-binding protein	-
BEI_RS08125 (BEI_1632)	-	1709481..1709924 (-)	444	WP_097789044.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30583.95 Da
• Isoelectric Point: 7.5159

>NTDB_id=230738 BEI_RS08105 WP_097789040.1 1704564..1705415(-) (pilD) [Halomonas beimenensis strain NTU-111]
MPVDLPPPLLWPLAAILGLCLGSFLNVVIVRLPVMLMREWRAEAREALELETEAPPTFNLVTPRSMCPRCEAPIAWHDNL
PLLGWLKRRGRCASCRSPISPQYPLVELAGGLLALAVVALYGASLEGLFILGACLALLAMAVIDLRTQLLPDILTLPLLW
AGLLYQLIFQPLQLPSAVVGAMAGYLALWSFYWLFKWVTGKEGMGYGDFKLLAALGAWLGWPFLPMVLILAAGAGAVVGV
IVQLAVPRLRGAPMPFGPWLAAAGWIALLVGEPLMATYLGLVT

Nucleotide

• Length: 852 bp

>NTDB_id=230738 BEI_RS08105 WP_097789040.1 1704564..1705415(-) (pilD) [Halomonas beimenensis strain NTU-111]
TTGCCTGTCGACCTTCCCCCCCCATTGCTGTGGCCGCTGGCCGCGATCCTCGGCCTGTGCCTCGGCAGCTTCCTCAACGT
GGTGATCGTGCGCCTGCCGGTCATGCTGATGCGCGAGTGGCGCGCCGAGGCCCGGGAGGCCCTGGAGCTCGAGACCGAGG
CGCCGCCGACCTTCAACCTGGTCACGCCGCGCTCGATGTGCCCGCGCTGCGAGGCCCCCATCGCCTGGCACGACAATCTG
CCGCTGCTGGGCTGGCTCAAGCGCCGCGGCCGCTGCGCGAGCTGCCGGTCGCCGATCAGCCCGCAGTACCCGCTGGTGGA
GCTGGCCGGCGGCTTGCTGGCCCTGGCGGTGGTCGCCCTGTACGGGGCCAGCCTGGAGGGGCTCTTCATCCTCGGCGCCT
GCCTGGCCCTGCTGGCCATGGCGGTGATCGACCTGCGCACCCAGCTGCTGCCGGACATCCTCACCCTCCCTTTGCTGTGG
GCGGGACTCCTCTACCAGCTGATCTTCCAGCCCCTGCAGCTGCCGAGCGCCGTGGTGGGCGCCATGGCCGGCTACCTGGC
GCTATGGAGCTTCTACTGGCTGTTCAAGTGGGTCACCGGCAAGGAAGGCATGGGCTATGGGGACTTCAAGCTGCTGGCGG
CCCTGGGCGCCTGGCTGGGCTGGCCCTTCCTGCCCATGGTGCTGATCCTCGCCGCCGGCGCCGGCGCGGTGGTCGGCGTC
ATCGTCCAGCTCGCCGTGCCCCGCCTGCGCGGCGCCCCCATGCCCTTCGGCCCCTGGCTGGCCGCGGCGGGCTGGATCGC
CCTGCTGGTCGGCGAGCCGCTGATGGCCACCTACCTGGGACTGGTGACCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-119)

• Type IV leader peptidase family (Peptidase_A24) (134-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	97.527	0.488
pilD	Vibrio campbellii strain DS40M4	46.667	95.406	0.445
pilD	Acinetobacter nosocomialis M2	45.421	96.466	0.438
pilD	Neisseria gonorrhoeae MS11	45.756	95.76	0.438
pilD	Acinetobacter baumannii D1279779	45.055	96.466	0.435