Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CV_RS16430 Genome accession   NC_005085
Coordinates   3630106..3631506 (+) Length   466 a.a.
NCBI ID   WP_011136879.1    Uniprot ID   Q7NST8
Organism   Chromobacterium violaceum ATCC 12472     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3625106..3636506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV_RS16405 (CV3327) - 3626713..3627690 (+) 978 WP_043596538.1 KpsF/GutQ family sugar-phosphate isomerase -
  CV_RS16410 (CV3328) - 3627737..3628261 (+) 525 WP_011136875.1 KdsC family phosphatase -
  CV_RS16415 (CV3329) lptC 3628258..3628827 (+) 570 WP_011136876.1 LPS export ABC transporter periplasmic protein LptC -
  CV_RS16420 (CV3330) lptA 3628817..3629377 (+) 561 WP_011136877.1 lipopolysaccharide transport periplasmic protein LptA -
  CV_RS16425 (CV3331) lptB 3629374..3630102 (+) 729 WP_011136878.1 LPS export ABC transporter ATP-binding protein -
  CV_RS16430 (CV3332) rpoN/rpoN1 3630106..3631506 (+) 1401 WP_011136879.1 RNA polymerase factor sigma-54 Machinery gene
  CV_RS16435 (CV3333) hpf 3631574..3631906 (+) 333 WP_011136880.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CV_RS16440 (CV3334) ptsN 3632029..3632490 (+) 462 WP_011136881.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CV_RS16445 (CV3335) hprK 3632483..3633439 (+) 957 WP_011136882.1 HPr(Ser) kinase/phosphatase -
  CV_RS16450 (CV3336) rapZ 3633420..3634262 (+) 843 WP_011136883.1 RNase adapter RapZ -
  CV_RS16455 (CV3337) - 3634315..3634920 (+) 606 WP_011136884.1 flavin prenyltransferase UbiX -
  CV_RS16460 (CV3338) - 3634923..3636389 (+) 1467 WP_011136885.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51515.64 Da        Isoelectric Point: 4.8629

>NTDB_id=23067 CV_RS16430 WP_011136879.1 3630106..3631506(+) (rpoN/rpoN1) [Chromobacterium violaceum ATCC 12472]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVERFLLDNPLLERGDEPRDGEAPGDGPEQQDSPVEAQEADSRDD
GAGELLDWGAGARKGDDDDFDPMLNVPCPISLREHLLTQLGELALTDRDRAVVSLLIEELDDDGYLPLGLDELAGNLPLE
LELDSDELAVGLALLQQFDPAGVGARSLAESLTLQLRRLPGDEPGHALALAIVREHLALLGGRDYARLKKLLRCDDAALR
DAQALIARLNPHPATGFGHGDVHYVIPDISVRKLRGRWTAELNRAAMPRLRVNRLYERMLADHRAGGEMSGRLQEARWLV
KNIQQRFDTILKVAEAIVERQQLFFEHGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLETE
SGGECSATAIKAHIRGMIDAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=23067 CV_RS16430 WP_011136879.1 3630106..3631506(+) (rpoN/rpoN1) [Chromobacterium violaceum ATCC 12472]
ATGAAACAGGCCCTTCAGCTCAAGGTATCCCAGCAACTGACGCTGACGCCGCAGCTGCAGCAGTCGATCAAGCTGCTGCA
GCTGTCCACGCTGGATCTGCAGGCGGAAGTGGAACGCTTCCTGCTCGACAATCCGCTGCTGGAGCGCGGCGACGAGCCCC
GCGACGGCGAGGCCCCGGGCGACGGCCCCGAACAGCAGGACAGCCCGGTCGAAGCGCAGGAAGCCGATAGCCGCGACGAC
GGCGCCGGCGAGCTGCTGGACTGGGGCGCGGGCGCACGCAAGGGGGACGACGACGACTTCGACCCCATGCTCAACGTGCC
CTGCCCCATCAGCCTGCGCGAGCACCTGCTGACCCAGCTGGGCGAGCTCGCCCTCACCGACCGCGACCGCGCGGTGGTCA
GCCTGCTGATCGAGGAGCTGGACGACGACGGCTACCTGCCGCTGGGACTGGACGAACTGGCCGGCAACCTGCCGCTGGAA
CTGGAGCTGGACAGCGACGAGCTGGCGGTGGGCCTCGCGCTGCTGCAGCAGTTCGACCCGGCCGGCGTCGGCGCCCGCTC
GCTGGCCGAATCGCTGACGCTGCAGCTGCGGCGCCTGCCGGGAGACGAGCCCGGGCACGCGCTGGCGCTGGCCATCGTCC
GCGAGCATCTGGCATTGCTGGGCGGACGCGACTACGCCAGGCTGAAAAAGCTGCTGCGCTGCGACGACGCCGCGCTGCGC
GACGCGCAGGCGCTGATCGCCAGGCTCAACCCCCATCCCGCCACCGGCTTCGGCCACGGCGACGTCCACTACGTGATCCC
CGACATCAGCGTACGCAAGCTGCGCGGCCGCTGGACCGCCGAGCTCAACCGCGCCGCGATGCCCCGCCTGCGGGTCAACC
GGCTGTACGAACGGATGCTGGCCGACCACCGCGCCGGCGGCGAAATGTCGGGCCGTCTGCAGGAGGCGCGCTGGCTGGTC
AAGAACATCCAGCAGCGATTTGACACCATACTCAAAGTGGCGGAAGCTATTGTCGAGCGTCAACAGTTGTTCTTTGAGCA
CGGCGAAGTGGCGATGCGCCCGCTGATTCTGCGGGACATCGCGGAAGAGCTGGGCCTGCACGAATCCACCGTTTCCCGAT
CCACCAGCCAGAAATACCTGCTCTGTTCGCGGGGTTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACTGAA
AGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCATATCCGCGGCATGATAGACGCCGAGGACCGCGCCAAGCCGCT
GTCCGACAGCGCCATCGCCGACGCGCTGGCCAAACAGGGAATTCAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAG
CCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(311-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NST8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.096

100

0.56

Multiple sequence alignment