Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   GBS_RS05210 Genome accession   NC_004368
Coordinates   1006712..1007380 (+) Length   222 a.a.
NCBI ID   WP_000076365.1    Uniprot ID   -
Organism   Streptococcus agalactiae NEM316     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1001712..1012380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS05190 (gbs0958) - 1002252..1002740 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  GBS_RS05195 - 1002906..1003867 (+) 962 Protein_955 S41 family peptidase -
  GBS_RS05200 (gbs0961) - 1003893..1004645 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  GBS_RS05205 (gbs0962) - 1004647..1006602 (+) 1956 WP_000499555.1 FtsX-like permease family protein -
  GBS_RS05210 (gbs0963) braR 1006712..1007380 (+) 669 WP_000076365.1 response regulator transcription factor Regulator
  GBS_RS05215 (gbs0964) - 1007377..1008315 (+) 939 WP_000620983.1 HAMP domain-containing sensor histidine kinase -
  GBS_RS05220 (gbs0965) xerS 1008358..1009428 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  GBS_RS05225 (gbs0966) - 1009881..1011476 (+) 1596 WP_000093958.1 peptide ABC transporter substrate-binding protein -
  GBS_RS05230 (gbs0967) - 1011509..1012282 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -

Sequence


Protein


Download         Length: 222 a.a.        Molecular weight: 25331.39 Da        Isoelectric Point: 5.3008

>NTDB_id=23066 GBS_RS05210 WP_000076365.1 1006712..1007380(+) (braR) [Streptococcus agalactiae NEM316]
MSQDQGKIYIVEDDMTIVSLLKGHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=23066 GBS_RS05210 WP_000076365.1 1006712..1007380(+) (braR) [Streptococcus agalactiae NEM316]
ATGTCACAAGATCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGGCCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGGATATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGAG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAGGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.198

0.464


Multiple sequence alignment