Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CCK83_RS04220 Genome accession   NZ_CP021428
Coordinates   878132..878761 (+) Length   209 a.a.
NCBI ID   WP_032006478.1    Uniprot ID   A0AAN4MFV8
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 873132..883761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04205 - 874195..875178 (-) 984 WP_032006482.1 putative solute-binding protein -
  CCK83_RS04210 - 875258..876073 (-) 816 WP_032006481.1 NAD-dependent epimerase/dehydratase family protein -
  CCK83_RS04215 recG 876094..878139 (+) 2046 WP_046811835.1 ATP-dependent DNA helicase RecG -
  CCK83_RS04220 comF 878132..878761 (+) 630 WP_032006478.1 ComF family protein Machinery gene
  CCK83_RS04225 mutT 878763..879164 (-) 402 WP_002116701.1 NUDIX hydrolase -
  CCK83_RS04230 - 879179..879760 (-) 582 WP_005804599.1 TIGR00730 family Rossman fold protein -
  CCK83_RS04235 - 879919..880932 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  CCK83_RS04240 - 881005..881292 (-) 288 WP_005078357.1 STAS domain-containing protein -
  CCK83_RS04245 - 881304..881945 (-) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  CCK83_RS04250 - 881972..882652 (-) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CCK83_RS04255 mlaE 882652..883428 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24387.56 Da        Isoelectric Point: 9.9490

>NTDB_id=230654 CCK83_RS04220 WP_032006478.1 878132..878761(+) (comF) [Acinetobacter pittii strain HUMV-6483]
MFSFLNFQPLIQLFSPCSLCELGAREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTVCLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=230654 CCK83_RS04220 WP_032006478.1 878132..878761(+) (comF) [Acinetobacter pittii strain HUMV-6483]
ATGTTTAGTTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCACTGTGCGAGTTAGGTGCGCGAGAAAA
ATATTCACTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACCGTGTGCCTAGCAGCGACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833

Multiple sequence alignment