Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CV_RS10740 Genome accession   NC_005085
Coordinates   2365119..2365913 (+) Length   264 a.a.
NCBI ID   WP_011135741.1    Uniprot ID   Q7NVZ7
Organism   Chromobacterium violaceum ATCC 12472     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2360119..2370913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV_RS10710 (CV2188) - 2360198..2360920 (-) 723 WP_011135736.1 metallophosphoesterase -
  CV_RS10715 (CV2189) - 2360945..2361598 (-) 654 WP_043596045.1 HD domain-containing protein -
  CV_RS10720 (CV2190) - 2361740..2362588 (-) 849 WP_043596046.1 GNAT family N-acetyltransferase -
  CV_RS10725 - 2362585..2363196 (-) 612 WP_043596048.1 AraC family transcriptional regulator -
  CV_RS10730 (CV2191) pgeF 2363302..2364039 (-) 738 WP_011135739.1 peptidoglycan editing factor PgeF -
  CV_RS10735 (CV2192) rluD 2364029..2365120 (-) 1092 WP_011135740.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CV_RS10740 (CV2193) comL 2365119..2365913 (+) 795 WP_011135741.1 outer membrane protein assembly factor BamD Machinery gene
  CV_RS10745 (CV2194) - 2365981..2367012 (-) 1032 WP_011135742.1 NAD(P)H-dependent flavin oxidoreductase -
  CV_RS10750 (CV2195) - 2367093..2367284 (+) 192 WP_011135743.1 hypothetical protein -
  CV_RS10755 (CV2196) rpsB 2367434..2368165 (+) 732 WP_011135744.1 30S ribosomal protein S2 -
  CV_RS10760 (CV2197) tsf 2368239..2369105 (+) 867 WP_011135745.1 translation elongation factor Ts -
  CV_RS10765 (CV2198) pyrH 2369197..2369916 (+) 720 WP_011135746.1 UMP kinase -
  CV_RS10770 (CV2199) frr 2369992..2370549 (+) 558 WP_011135747.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30267.42 Da        Isoelectric Point: 7.9695

>NTDB_id=23062 CV_RS10740 WP_011135741.1 2365119..2365913(+) (comL) [Chromobacterium violaceum ATCC 12472]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPSSSYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDARRVLAL
NYPQSQYLGKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=23062 CV_RS10740 WP_011135741.1 2365119..2365913(+) (comL) [Chromobacterium violaceum ATCC 12472]
ATGAAAAGATACGTTGTTGCGGCTATGTTGGTGATGGTGGGTCTTGCCGGGTGTGCGACCACGGAAACCTACGACGAGAC
GCGCGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCGCAGATGGATCTGGCCTACACCCATTAC
AAGGATGGCGAACCCGAACTGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTGCATCCCACGCATCCGAACCTCGACTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGACGATTCTGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGCGATCCGCGCGCCGCGCGCGAGGCGTTCGCCGCCTTCCGCGAGCTGACCACCCGCTTCCCCAGCAGCAGCTACGCG
CCGGACGCCAAGGCCAAGATGATCCGCCTGGTGGACGCCCTGGGCGGCAACGAAATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCCGCCAATCGCGCGCAGGGCGTGGTCAAGGATTACGCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGGCCGCCTACGACAAGCTGCAGTTGCCGCAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGCTC
AATTACCCGCAGAGCCAGTACCTGGGCAAGTCGTGGACGGTGGAGGAGATGCCGTGGTGGAAGCTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NVZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

100

0.587
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58

Multiple sequence alignment