Detailed information NTG0230610

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: CCE29_RS07180
• Genome accession: NZ_CP021426
• Coordinates: 1366789..1367379 (-)
• Length: 196 a.a.
• NCBI ID: WP_005709832.1
• Uniprot ID: A0A0J6XXP0
• Organism: Lacticaseibacillus rhamnosus strain 4B15
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1359305..1369099	1366789..1367379	within	0

Gene organization within MGE regions

Location: 1359305..1369099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCE29_RS07125 (CCE29_07090)	-	1359305..1359982 (-)	678	WP_014568879.1	CPBP family intramembrane glutamic endopeptidase	-
CCE29_RS07135 (CCE29_07100)	-	1361018..1362034 (-)	1017	WP_014568877.1	IS30 family transposase	-
CCE29_RS07140 (CCE29_07105)	-	1362190..1362447 (+)	258	WP_015764802.1	hypothetical protein	-
CCE29_RS07145 (CCE29_07110)	-	1362526..1362720 (-)	195	WP_005707490.1	hypothetical protein	-
CCE29_RS07150 (CCE29_07115)	cydB	1362760..1363779 (-)	1020	WP_014568875.1	cytochrome d ubiquinol oxidase subunit II	-
CCE29_RS07155 (CCE29_07120)	-	1363772..1365250 (-)	1479	WP_014568874.1	cytochrome ubiquinol oxidase subunit I	-
CCE29_RS07160 (CCE29_07125)	-	1365561..1366067 (+)	507	WP_005685670.1	type 1 glutamine amidotransferase domain-containing protein	-
CCE29_RS07175 (CCE29_07140)	rpsR	1366461..1366697 (-)	237	WP_003568467.1	30S ribosomal protein S18	-
CCE29_RS07180 (CCE29_07145)	ssb	1366789..1367379 (-)	591	WP_005709832.1	single-stranded DNA-binding protein	Machinery gene
CCE29_RS07185 (CCE29_07150)	rpsF	1367409..1367705 (-)	297	WP_005685677.1	30S ribosomal protein S6	-
CCE29_RS07190 (CCE29_07155)	ssb	1367832..1368263 (-)	432	WP_005690380.1	single-stranded DNA-binding protein	-
CCE29_RS07195 (CCE29_07160)	-	1368373..1368459 (+)	87	Protein_1265	deoxyribose-phosphate aldolase	-
CCE29_RS15995	-	1368587..1369099 (-)	513	WP_223804855.1	PedC/BrcD family bacteriocin maturation disulfide isomerase	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 20932.66 Da
• Isoelectric Point: 4.9056

>NTDB_id=230610 CCE29_RS07180 WP_005709832.1 1366789..1367379(-) (ssb) [Lacticaseibacillus rhamnosus strain 4B15]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide

• Length: 591 bp

>NTDB_id=230610 CCE29_RS07180 WP_005709832.1 1366789..1367379(-) (ssb) [Lacticaseibacillus rhamnosus strain 4B15]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-102)

3D structure

• AlphaFold DB: A0A0J6XXP0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60.204	100	0.602
ssbA	Bacillus subtilis subsp. subtilis str. 168	49.749	100	0.505