Detailed information NTG0230448

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC09_RS22325
• Genome accession: NZ_CP027134
• Coordinates: 3976420..3977412 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0372
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3971420..3982412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC09_RS22300 (CSC09_3920)	ygbN	3972075..3973439 (+)	1365	WP_024166527.1	GntP family transporter	-
CSC09_RS22305 (CSC09_3921)	-	3973478..3973714 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CSC09_RS22310 (CSC09_3922)	-	3973725..3975152 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CSC09_RS22315 (CSC09_3923)	-	3975152..3975745 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CSC09_RS22320 (CSC09_3924)	-	3975892..3976299 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
CSC09_RS22325 (CSC09_3925)	rpoS	3976420..3977412 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CSC09_RS22330 (CSC09_3926)	nlpD	3977475..3978569 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CSC09_RS22335 (CSC09_3928)	pcm	3978754..3979380 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CSC09_RS22340 (CSC09_3929)	surE	3979374..3980135 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CSC09_RS22345 (CSC09_3930)	truD	3980116..3981165 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CSC09_RS22350 (CSC09_3931)	ispF	3981162..3981641 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC09_RS22355 (CSC09_3932)	ispD	3981641..3982351 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=230448 CSC09_RS22325 WP_000081550.1 3976420..3977412(-) (rpoS) [Escherichia coli strain AR_0372]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=230448 CSC09_RS22325 WP_000081550.1 3976420..3977412(-) (rpoS) [Escherichia coli strain AR_0372]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715