Detailed information NTG0230123

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB987_RS19280
• Genome accession: NZ_CP021347
• Coordinates: 1185540..1186400 (+)
• Length: 286 a.a.
• NCBI ID: WP_002126490.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain B8300
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1180540..1191400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB987_RS05750 (AB987_1155)	secG	1181145..1181474 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
AB987_RS05755 (AB987_1156)	tpiA	1181487..1182281 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
AB987_RS05760 (AB987_1157)	pilB	1182572..1184284 (+)	1713	WP_001274979.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB987_RS05765 (AB987_1158)	pilC	1184314..1185540 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
AB987_RS19280 (AB987_1159)	pilD	1185540..1186400 (+)	861	WP_002126490.1	A24 family peptidase	Machinery gene
AB987_RS05775 (AB987_1160)	coaE	1186402..1186998 (+)	597	WP_002126478.1	dephospho-CoA kinase	-
AB987_RS05780 (AB987_1161)	-	1186995..1187909 (-)	915	WP_002126491.1	DMT family transporter	-
AB987_RS05785 (AB987_1162)	rlmB	1187945..1188694 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB987_RS05790 (AB987_1163)	-	1188796..1189122 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AB987_RS05795 (AB987_1164)	-	1189199..1190509 (-)	1311	WP_002126504.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32086.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=230123 AB987_RS19280 WP_002126490.1 1185540..1186400(+) (pilD) [Acinetobacter baumannii strain B8300]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLATLGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=230123 AB987_RS19280 WP_002126490.1 1185540..1186400(+) (pilD) [Acinetobacter baumannii strain B8300]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCCGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAACATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437