Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AB987_RS17620 | Genome accession | NZ_CP021347 |
| Coordinates | 3625856..3626236 (-) | Length | 126 a.a. |
| NCBI ID | WP_004835297.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain B8300 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3620856..3631236
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB987_RS17590 (AB987_3573) | tadA | 3620975..3621478 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| AB987_RS17595 (AB987_3574) | - | 3621485..3622609 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AB987_RS17600 (AB987_3575) | ung | 3622606..3623319 (-) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| AB987_RS17605 (AB987_3576) | - | 3623370..3623966 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| AB987_RS17610 (AB987_3577) | gspK | 3624196..3625155 (-) | 960 | WP_000301465.1 | type II secretion system minor pseudopilin GspK | - |
| AB987_RS17615 (AB987_3578) | xcpW | 3625155..3625856 (-) | 702 | WP_000594576.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AB987_RS17620 (AB987_3579) | xcpV | 3625856..3626236 (-) | 381 | WP_004835297.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AB987_RS17625 (AB987_3580) | - | 3626226..3626780 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AB987_RS17630 (AB987_3581) | - | 3626790..3627398 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AB987_RS17635 (AB987_3582) | - | 3627436..3628209 (-) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| AB987_RS17640 (AB987_3583) | - | 3628227..3628568 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AB987_RS17645 (AB987_3584) | - | 3628580..3629560 (-) | 981 | WP_004835299.1 | DNA polymerase III, delta' subunit | - |
| AB987_RS17650 (AB987_3585) | kdsB | 3629572..3630333 (-) | 762 | WP_004835301.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13960.23 Da Isoelectric Point: 9.8004
>NTDB_id=230121 AB987_RS17620 WP_004835297.1 3625856..3626236(-) (xcpV) [Acinetobacter baumannii strain B8300]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMLYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMLYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=230121 AB987_RS17620 WP_004835297.1 3625856..3626236(-) (xcpV) [Acinetobacter baumannii strain B8300]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCTGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCTGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |