Detailed information NTG0230120

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AB987_RS17615
• Genome accession: NZ_CP021347
• Coordinates: 3625155..3625856 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594576.1
• Uniprot ID: A0A429LRQ6
• Organism: Acinetobacter baumannii strain B8300
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3620155..3630856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB987_RS17585	-	3620462..3620905 (-)	444	Protein_3409	SRPBCC family protein	-
AB987_RS17590 (AB987_3573)	tadA	3620975..3621478 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
AB987_RS17595 (AB987_3574)	-	3621485..3622609 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AB987_RS17600 (AB987_3575)	ung	3622606..3623319 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
AB987_RS17605 (AB987_3576)	-	3623370..3623966 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
AB987_RS17610 (AB987_3577)	gspK	3624196..3625155 (-)	960	WP_000301465.1	type II secretion system minor pseudopilin GspK	-
AB987_RS17615 (AB987_3578)	xcpW	3625155..3625856 (-)	702	WP_000594576.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AB987_RS17620 (AB987_3579)	xcpV	3625856..3626236 (-)	381	WP_004835297.1	type II secretion system minor pseudopilin GspI	Machinery gene
AB987_RS17625 (AB987_3580)	-	3626226..3626780 (-)	555	WP_000841373.1	type II secretion system protein	-
AB987_RS17630 (AB987_3581)	-	3626790..3627398 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AB987_RS17635 (AB987_3582)	-	3627436..3628209 (-)	774	WP_000497302.1	TatD family hydrolase	-
AB987_RS17640 (AB987_3583)	-	3628227..3628568 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
AB987_RS17645 (AB987_3584)	-	3628580..3629560 (-)	981	WP_004835299.1	DNA polymerase III, delta' subunit	-
AB987_RS17650 (AB987_3585)	kdsB	3629572..3630333 (-)	762	WP_004835301.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26643.61 Da
• Isoelectric Point: 9.5501

>NTDB_id=230120 AB987_RS17615 WP_000594576.1 3625155..3625856(-) (xcpW) [Acinetobacter baumannii strain B8300]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEINIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=230120 AB987_RS17615 WP_000594576.1 3625155..3625856(-) (xcpW) [Acinetobacter baumannii strain B8300]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGATTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A429LRQ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991