Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB987_RS09535 Genome accession   NZ_CP021347
Coordinates   1961453..1962088 (-) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii strain B8300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956453..1967088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS09500 (AB987_1924) mlaE 1956789..1957565 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AB987_RS09505 (AB987_1925) - 1957565..1958245 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AB987_RS09510 (AB987_1926) - 1958272..1958913 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  AB987_RS09515 (AB987_1927) - 1958925..1959212 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  AB987_RS09520 (AB987_1929) - 1959282..1960295 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  AB987_RS09525 (AB987_1930) - 1960453..1961034 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  AB987_RS09530 (AB987_1931) - 1961049..1961450 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  AB987_RS09535 (AB987_1932) comF 1961453..1962088 (-) 636 WP_002125534.1 ComF family protein Machinery gene
  AB987_RS09540 (AB987_1933) recG 1962081..1964126 (-) 2046 WP_002125548.1 ATP-dependent DNA helicase RecG -
  AB987_RS09545 (AB987_1934) - 1964147..1964962 (+) 816 WP_002125547.1 NAD-dependent epimerase/dehydratase family protein -
  AB987_RS09550 (AB987_1935) adeT2 1965042..1966028 (+) 987 WP_000712908.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=230112 AB987_RS09535 WP_002125534.1 1961453..1962088(-) (comF) [Acinetobacter baumannii strain B8300]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=230112 AB987_RS09535 WP_002125534.1 1961453..1962088(-) (comF) [Acinetobacter baumannii strain B8300]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment