Detailed information NTG0230074

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB895_RS19605
• Genome accession: NZ_CP021342
• Coordinates: 1861925..1862785 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152283.1
• Uniprot ID: A0A009QK25
• Organism: Acinetobacter baumannii strain B8342
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1856925..1867785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB895_RS08915 (AB895_1817)	-	1857816..1859126 (+)	1311	WP_000753283.1	tetratricopeptide repeat protein	-
AB895_RS08920 (AB895_1818)	-	1859203..1859529 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AB895_RS08925 (AB895_1819)	rlmB	1859631..1860380 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB895_RS08930 (AB895_1820)	-	1860416..1861330 (+)	915	WP_004737922.1	DMT family transporter	-
AB895_RS08935 (AB895_1821)	coaE	1861327..1861923 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
AB895_RS19605 (AB895_1822)	pilD	1861925..1862785 (-)	861	WP_001152283.1	A24 family peptidase	Machinery gene
AB895_RS08945 (AB895_1823)	pilC	1862785..1864011 (-)	1227	WP_004737924.1	type II secretion system F family protein	Machinery gene
AB895_RS08950 (AB895_1824)	pilB	1864041..1865753 (-)	1713	WP_001274992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB895_RS08955 (AB895_1825)	tpiA	1866044..1866838 (+)	795	WP_000016932.1	triose-phosphate isomerase	-
AB895_RS08960 (AB895_1826)	secG	1866851..1867180 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32144.59 Da
• Isoelectric Point: 7.1041

>NTDB_id=230074 AB895_RS19605 WP_001152283.1 1861925..1862785(-) (pilD) [Acinetobacter baumannii strain B8342]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=230074 AB895_RS19605 WP_001152283.1 1861925..1862785(-) (pilD) [Acinetobacter baumannii strain B8342]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A009QK25

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441