Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SMU_RS09840 Genome accession   NC_004350
Coordinates   2019400..2020491 (+) Length   363 a.a.
NCBI ID   WP_002262456.1    Uniprot ID   Q8DRR3
Organism   Streptococcus mutans UA159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2014400..2025491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS09815 (SMU.2151) pgsA 2014808..2015350 (-) 543 WP_002262451.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SMU_RS09820 (SMU.2152c) - 2015362..2016339 (-) 978 WP_002262452.1 helix-turn-helix domain-containing protein -
  SMU_RS09825 (SMU.2153c) - 2016412..2017704 (-) 1293 WP_002352377.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SMU_RS09830 (SMU.2154c) - 2017706..2018953 (-) 1248 WP_002262454.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SMU_RS09835 (SMU.2155) yaaA 2019032..2019397 (+) 366 WP_002262455.1 S4 domain-containing protein YaaA -
  SMU_RS09840 (SMU.2156) recF 2019400..2020491 (+) 1092 WP_002262456.1 DNA replication/repair protein RecF Machinery gene
  SMU_RS09845 (SMU.2157) guaB 2020654..2022135 (-) 1482 WP_002262457.1 IMP dehydrogenase -
  SMU_RS09850 (SMU.2158c) trpS 2022292..2023314 (-) 1023 WP_002262458.1 tryptophan--tRNA ligase -
  SMU_RS09855 (SMU.2159) - 2023747..2025366 (+) 1620 WP_002262459.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 42003.21 Da        Isoelectric Point: 9.8334

>NTDB_id=23007 SMU_RS09840 WP_002262456.1 2019400..2020491(+) (recF) [Streptococcus mutans UA159]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNASFGSQGQHRSLILSLKLAEIELTKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVLSE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=23007 SMU_RS09840 WP_002262456.1 2019400..2020491(+) (recF) [Streptococcus mutans UA159]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTCTTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AACGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCACACCGCGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAGCTTTGGTAGTCAAGGACAACATCGCAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTACAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAAGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGCCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGCTATCAGAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65

99.174

0.645
  recF Bacillus subtilis subsp. subtilis str. 168

43.631

100

0.444

Multiple sequence alignment