Detailed information NTG0230059

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C5099_RS19010
• Genome accession: NZ_CP027103
• Coordinates: 3639445..3640437 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM14723
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3634445..3645437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5099_RS18990 (C5099_18980)	ygbM	3635078..3635853 (+)	776	Protein_3504	HPr family phosphocarrier protein	-
C5099_RS18995 (C5099_18985)	ygbN	3635942..3637306 (+)	1365	WP_000104433.1	GntP family transporter	-
C5099_RS19000 (C5099_18990)	-	3637449..3638491 (-)	1043	Protein_3506	MBL fold metallo-hydrolase	-
C5099_RS19005 (C5099_18995)	-	3638716..3639267 (+)	552	WP_001179442.1	flavodoxin family protein	-
C5099_RS19010 (C5099_19000)	rpoS	3639445..3640437 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C5099_RS19015 (C5099_19005)	nlpD	3640500..3641594 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C5099_RS19020 (C5099_19010)	pcm	3641779..3642405 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C5099_RS19025 (C5099_19015)	surE	3642399..3643160 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C5099_RS19030 (C5099_19020)	truD	3643141..3644190 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
C5099_RS19035 (C5099_19025)	ispF	3644187..3644666 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C5099_RS19040 (C5099_19030)	ispD	3644666..3645376 (-)	711	WP_001357578.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=230059 C5099_RS19010 WP_000081550.1 3639445..3640437(-) (rpoS) [Escherichia coli strain RM14723]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=230059 C5099_RS19010 WP_000081550.1 3639445..3640437(-) (rpoS) [Escherichia coli strain RM14723]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACACGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCGAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715