Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C5099_RS18375 Genome accession   NZ_CP027103
Coordinates   3525384..3526121 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RM14723     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3520384..3531121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5099_RS18360 (C5099_18345) clpC 3520838..3523411 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C5099_RS18365 (C5099_18350) yfiH 3523541..3524272 (-) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  C5099_RS18370 (C5099_18355) rluD 3524269..3525249 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C5099_RS18375 (C5099_18360) comL 3525384..3526121 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C5099_RS18380 (C5099_18365) insG 3526225..3527571 (+) 1347 WP_024229439.1 IS4-like element IS4 family transposase -
  C5099_RS18390 (C5099_18375) raiA 3527832..3528173 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C5099_RS18395 (C5099_18380) pheL 3528277..3528324 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C5099_RS18400 (C5099_18385) pheA 3528423..3529583 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  C5099_RS18405 (C5099_18390) tyrA 3529626..3530747 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=230055 C5099_RS18375 WP_000197686.1 3525384..3526121(+) (comL) [Escherichia coli strain RM14723]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=230055 C5099_RS18375 WP_000197686.1 3525384..3526121(+) (comL) [Escherichia coli strain RM14723]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376