Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AB895_RS05705 Genome accession   NZ_CP021342
Coordinates   1193669..1194142 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188669..1199142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS05690 (AB895_1155) pilX 1191298..1192116 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB895_RS05695 (AB895_1156) pilW 1192113..1193114 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AB895_RS05700 (AB895_1157) pilV 1193115..1193675 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB895_RS05705 (AB895_1158) fimU 1193669..1194142 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB895_RS05710 (AB895_1159) ispH 1194312..1195262 (-) 951 WP_038349718.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB895_RS05715 (AB895_1160) gmk 1195385..1196014 (+) 630 WP_000015937.1 guanylate kinase -
  AB895_RS05720 (AB895_1161) rpoZ 1196087..1196365 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB895_RS19215 - 1196404..1196534 (+) 131 Protein_1101 hypothetical protein -
  AB895_RS05725 (AB895_1162) - 1196574..1198679 (+) 2106 WP_038349720.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=230040 AB895_RS05705 WP_001214065.1 1193669..1194142(-) (fimU) [Acinetobacter baumannii strain B8342]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=230040 AB895_RS05705 WP_001214065.1 1193669..1194142(-) (fimU) [Acinetobacter baumannii strain B8342]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment