Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB895_RS05690 Genome accession   NZ_CP021342
Coordinates   1191298..1192116 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186298..1197116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS05675 (AB895_1152) pilE 1186515..1186940 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AB895_RS05680 (AB895_1153) pilY2 1186937..1187419 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AB895_RS05685 (AB895_1154) pilY1 1187432..1191286 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AB895_RS05690 (AB895_1155) pilX 1191298..1192116 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB895_RS05695 (AB895_1156) pilW 1192113..1193114 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AB895_RS05700 (AB895_1157) pilV 1193115..1193675 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB895_RS05705 (AB895_1158) fimU 1193669..1194142 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB895_RS05710 (AB895_1159) ispH 1194312..1195262 (-) 951 WP_038349718.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB895_RS05715 (AB895_1160) gmk 1195385..1196014 (+) 630 WP_000015937.1 guanylate kinase -
  AB895_RS05720 (AB895_1161) rpoZ 1196087..1196365 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB895_RS19215 - 1196404..1196534 (+) 131 Protein_1101 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=230037 AB895_RS05690 WP_000149376.1 1191298..1192116(-) (pilX) [Acinetobacter baumannii strain B8342]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=230037 AB895_RS05690 WP_000149376.1 1191298..1192116(-) (pilX) [Acinetobacter baumannii strain B8342]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment