Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   C5L38_RS18905 Genome accession   NZ_CP027022
Coordinates   4128555..4129958 (-) Length   467 a.a.
NCBI ID   WP_062754447.1    Uniprot ID   A0AAV4KTS5
Organism   Streptomyces sp. WAC00288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4123555..4134958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS18885 (C5L38_18890) - 4123948..4124883 (-) 936 WP_062754443.1 A/G-specific adenine glycosylase -
  C5L38_RS18890 (C5L38_18895) - 4125301..4125915 (-) 615 Protein_3735 phosphatase PAP2 family protein -
  C5L38_RS18895 (C5L38_18900) - 4126139..4126996 (+) 858 WP_079131149.1 hypothetical protein -
  C5L38_RS18900 (C5L38_18905) disA 4127043..4128167 (-) 1125 WP_030219534.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  C5L38_RS18905 (C5L38_18910) radA/sms 4128555..4129958 (-) 1404 WP_062754447.1 DNA repair protein RadA Machinery gene
  C5L38_RS18910 (C5L38_18915) - 4130136..4131917 (+) 1782 WP_062754449.1 sigma-70 family RNA polymerase sigma factor -
  C5L38_RS18915 (C5L38_18920) - 4131939..4132799 (-) 861 WP_062754451.1 hypothetical protein -
  C5L38_RS18920 (C5L38_18925) - 4132840..4133772 (+) 933 WP_062754453.1 Ppx/GppA phosphatase family protein -
  C5L38_RS18925 (C5L38_18930) - 4133857..4134693 (+) 837 WP_183953370.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49062.06 Da        Isoelectric Point: 7.1766

>NTDB_id=229891 C5L38_RS18905 WP_062754447.1 4128555..4129958(-) (radA/sms) [Streptomyces sp. WAC00288]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAVL
GHLDAVQPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQSLTVDSQI
PSPRRTVSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPPGMKVTEVADMGDALRVLPRGRRAKAPEGAEQ

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=229891 C5L38_RS18905 WP_062754447.1 4128555..4129958(-) (radA/sms) [Streptomyces sp. WAC00288]
ATGGCTGCCCGTACGAAATCCGCCAAAGAGCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTGGAGGAGTACGGCGCGCCCGCCGTCCGGACGACCGCCGCGGGCC
GGGTCTCCACCGCCGCGCTTCCCATCGGGCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCGACCGGCGTGGACGAGCTG
GACCGGGTCCTCGGCGGGGGGCTCGTGCCCGGTGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGACGCT
GCTGCTCGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTCACCGGCGAGGAGTCCGCGAGCCAGG
TGCGGCTGCGGGCCGACCGGATCGGCGCGATCGACGACCACCTGTACCTGGCGGCGGAGACCGACCTGTCGGCGGTCCTC
GGGCACCTGGACGCGGTGCAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACCGTGGCCTCGCCCGAGATCGACGGCGC
GCCCGGTGGCATGGCGCAGGTCCGCGAGGTCGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TGGTCGGCCACGTCACCAAGGACGGGGCCATCGCGGGCCCCCGGCTCCTGGAGCACCTGGTCGACGTGGTGCTGAGCTTC
GAGGGCGACCGGCACGCGCGGCTGCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACGGGGCTCGCCGACCCGTCGGGGCTCTTCCTGACCCGGCGCGACGTGGCCGTGCCGG
GCACGTGTCTGACGGTGACCCTGGAGGGGCGCCGGCCGCTCGTCGCCGAGGTCCAGTCGCTGACGGTGGACTCCCAGATC
CCCTCCCCGCGCCGGACCGTCTCCGGTCTGGAGACCTCCCGGGTGTCGATGATGCTGGCGGTCCTGGAGCAGCGCGGGCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGCGTGAAGCTCTCCGAGCCGGCCGCCGACCTGG
CGATCGCGCTCGCGCTCGCCTCCGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTCGGGCTC
GCGGGCGAGGTCCGGCGGGTGACGGGCGTGCAGCGGCGTCTCGCGGAGGCGCACCGCCTCGGCTTCACGCACGCGCTGGT
CCCGACGGACCCGGGGAGGGTCCCGCCGGGCATGAAGGTGACGGAGGTCGCGGACATGGGCGACGCTCTGCGGGTCCTGC
CGCGCGGGCGGCGCGCGAAGGCGCCGGAGGGCGCGGAGCAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAV4KTS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

97.002

0.426
  radA Streptococcus mitis NCTC 12261

43.584

96.788

0.422
  radA Streptococcus mitis SK321

44.495

93.362

0.415
  radA Streptococcus pneumoniae TIGR4

44.626

91.649

0.409
  radA Streptococcus pneumoniae Rx1

44.626

91.649

0.409
  radA Streptococcus pneumoniae D39

44.626

91.649

0.409
  radA Streptococcus pneumoniae R6

44.626

91.649

0.409

Multiple sequence alignment