Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C5L38_RS14995 Genome accession   NZ_CP027022
Coordinates   3306183..3306806 (+) Length   207 a.a.
NCBI ID   WP_062753232.1    Uniprot ID   -
Organism   Streptomyces sp. WAC00288     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3301183..3311806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS14970 (C5L38_14975) - 3301192..3301767 (+) 576 WP_062753223.1 TerD family protein -
  C5L38_RS14975 (C5L38_14980) - 3302007..3302573 (+) 567 WP_152370549.1 hypothetical protein -
  C5L38_RS14980 (C5L38_14985) - 3302666..3304009 (-) 1344 WP_234363914.1 M1 family metallopeptidase -
  C5L38_RS14985 (C5L38_14990) - 3304181..3304717 (-) 537 WP_062753230.1 heme-binding protein -
  C5L38_RS14990 (C5L38_14995) - 3304987..3306138 (+) 1152 WP_234363774.1 sensor histidine kinase -
  C5L38_RS14995 (C5L38_15000) vraR 3306183..3306806 (+) 624 WP_062753232.1 response regulator transcription factor Regulator
  C5L38_RS15000 (C5L38_15005) - 3306924..3308135 (+) 1212 WP_062753234.1 FAD-dependent monooxygenase -
  C5L38_RS15005 (C5L38_15010) - 3308247..3308747 (+) 501 WP_062753237.1 hypothetical protein -
  C5L38_RS15010 (C5L38_15015) - 3308744..3309433 (-) 690 WP_062753240.1 pentapeptide repeat-containing protein -
  C5L38_RS15015 (C5L38_15020) - 3309536..3310699 (+) 1164 WP_062753242.1 NAD(P)-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21667.02 Da        Isoelectric Point: 7.3605

>NTDB_id=229877 C5L38_RS14995 WP_062753232.1 3306183..3306806(+) (vraR) [Streptomyces sp. WAC00288]
MSSVRILLCDDHVVVRAGLLALLGSTPDIDVVGEAGSGEEAVAMAAKLKPDVVLMDLQLGSGIDGVEATRRIAPTGVHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIHAAAQGRTALSPPVASRVMDRMRGAAGPSLTDRERDILGQLGRG
LGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKERRLLP

Nucleotide


Download         Length: 624 bp        

>NTDB_id=229877 C5L38_RS14995 WP_062753232.1 3306183..3306806(+) (vraR) [Streptomyces sp. WAC00288]
ATGTCCTCCGTACGGATCCTGCTCTGCGACGACCACGTGGTGGTCCGCGCCGGGCTGCTCGCCCTCCTCGGCAGCACCCC
CGACATCGACGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCGGTCGCGATGGCGGCGAAGCTGAAGCCGGACGTCGTCC
TCATGGACCTCCAGCTGGGGTCCGGCATCGACGGCGTGGAGGCGACCCGCCGGATCGCGCCGACCGGCGTCCACGTCCTC
GTCCTCACCACGTACGACACGGACGCCGACATCACCCGGGCGATCGGGGCGGGCGCGACCGGCTACCTCCTGAAGGCCGA
GCGGCCGGAGGAGCTGTTCGCGGCCATCCACGCGGCCGCGCAGGGCCGCACCGCCCTCTCGCCGCCGGTCGCCAGCCGGG
TCATGGACCGGATGCGGGGCGCGGCGGGCCCGAGCCTCACCGACCGGGAGCGGGACATCCTCGGGCAGCTCGGGCGCGGC
CTCGGCAACCGGGAGATCGCGCGGGCCCTGTTCATCAGCGAGGCGACGGTGAAGACCCACCTGGGCCGGATCTACGCCAA
GCTCGGCGTGGACACGAGGGCGGGCGCGGTGGCGGTGGCGAAGGAGCGCCGACTGCTGCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-200)

Response regulator receiver domain (Response_reg)

(6-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.234

100

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

34.685

100

0.372