Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RK60_RS14150 Genome accession   NZ_CP026968
Coordinates   2684555..2685667 (+) Length   370 a.a.
NCBI ID   WP_016170584.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2679555..2690667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK60_RS14125 (RK60_14125) rnpA 2679818..2680171 (-) 354 WP_001789343.1 ribonuclease P protein component -
  RK60_RS14130 (RK60_14130) rpmH 2680292..2680429 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  RK60_RS14135 (RK60_14135) dnaA 2681160..2682521 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  RK60_RS14140 (RK60_14140) dnaN 2682799..2683932 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  RK60_RS14145 (RK60_14145) yaaA 2684313..2684558 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  RK60_RS14150 (RK60_14150) recF 2684555..2685667 (+) 1113 WP_016170584.1 DNA replication/repair protein RecF Machinery gene
  RK60_RS14155 (RK60_14155) gyrB 2685677..2687611 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RK60_RS14160 (RK60_14160) gyrA 2687648..2690317 (+) 2670 WP_000819096.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42383.37 Da        Isoelectric Point: 6.4362

>NTDB_id=229845 RK60_RS14150 WP_016170584.1 2684555..2685667(+) (recF) [Staphylococcus aureus strain FDAARGOS_1]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGVDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=229845 RK60_RS14150 WP_016170584.1 2684555..2685667(+) (recF) [Staphylococcus aureus strain FDAARGOS_1]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCGTGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.062

100

0.495