Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA919_RS13915 Genome accession   NZ_CP021286
Coordinates   3085989..3086618 (-) Length   209 a.a.
NCBI ID   WP_202863397.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Albuquerque     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080989..3091618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA919_RS13900 - 3082091..3082750 (+) 660 WP_015961724.1 hypothetical protein -
  CA919_RS13905 - 3082918..3084066 (+) 1149 WP_015961725.1 DUF1566 domain-containing protein -
  CA919_RS13910 uvrC 3084090..3085946 (-) 1857 WP_015961726.1 excinuclease ABC subunit UvrC -
  CA919_RS13915 letA 3085989..3086618 (-) 630 WP_202863397.1 two-component system response regulator LetA Regulator
  CA919_RS13920 phhA 3086743..3087561 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  CA919_RS13925 - 3088001..3089098 (+) 1098 WP_015961728.1 competence/damage-inducible protein A -
  CA919_RS13930 cgtA 3089057..3090082 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  CA919_RS13935 rpmA 3090296..3090574 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA919_RS13940 rplU 3090587..3090898 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23380.18 Da        Isoelectric Point: 5.1332

>NTDB_id=229730 CA919_RS13915 WP_202863397.1 3085989..3086618(-) (letA) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELNLFGYEAPHY

Nucleotide


Download         Length: 630 bp        

>NTDB_id=229730 CA919_RS13915 WP_202863397.1 3085989..3086618(-) (letA) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTAACTTATTTGGCTATGAAGCACCGCATTATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-199)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

98.03

97.129

0.952
  letA Legionella pneumophila strain ERS1305867

98.03

97.129

0.952

Multiple sequence alignment