Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CA921_RS11135 Genome accession   NZ_CP021283
Coordinates   2504346..2505050 (+) Length   234 a.a.
NCBI ID   WP_374188626.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2499346..2510050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS11110 - 2500578..2501456 (+) 879 WP_038839266.1 lpg2327 family Dot/Icm T4SS effector -
  CA921_RS11115 lem22 2501720..2502103 (+) 384 WP_038839268.1 Dot/Icm T4SS effector Lem22 -
  CA921_RS11120 - 2502297..2502527 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  CA921_RS11125 - 2502508..2503404 (+) 897 WP_161504603.1 polyprenyl synthetase family protein -
  CA921_RS11130 bioC 2503448..2504302 (-) 855 WP_038839276.1 malonyl-ACP O-methyltransferase BioC -
  CA921_RS11135 comFC 2504346..2505050 (+) 705 WP_374188626.1 ComF family protein Machinery gene
  CA921_RS11140 - 2505079..2506152 (-) 1074 WP_061692223.1 M50 family metallopeptidase -
  CA921_RS11145 - 2506209..2506487 (-) 279 WP_010948040.1 hypothetical protein -
  CA921_RS16765 - 2506505..2506681 (+) 177 WP_014844483.1 hypothetical protein -
  CA921_RS11150 hemA 2506805..2508079 (+) 1275 WP_027225189.1 glutamyl-tRNA reductase -
  CA921_RS11155 prfA 2508063..2509151 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  CA921_RS11160 prmC 2509144..2510007 (+) 864 WP_061692224.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26831.49 Da        Isoelectric Point: 9.4004

>NTDB_id=229685 CA921_RS11135 WP_374188626.1 2504346..2505050(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Allentown]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQIGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDRAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=229685 CA921_RS11135 WP_374188626.1 2504346..2505050(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Allentown]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAAATTGGATCATGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGAGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGTCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAACTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

98.718

100

0.987
  comFC Legionella pneumophila strain ERS1305867

98.469

83.761

0.825

Multiple sequence alignment