Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CA921_RS04940 Genome accession   NZ_CP021283
Coordinates   1071642..1072190 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1066642..1077190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS04930 ravI 1069150..1070157 (-) 1008 WP_061637670.1 Dot/Icm T4SS effector RavI -
  CA921_RS04935 pilM 1070574..1071638 (+) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  CA921_RS04940 pilN 1071642..1072190 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  CA921_RS04945 pilO 1072204..1072803 (+) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA921_RS04950 pilP 1072800..1073384 (+) 585 WP_027266404.1 pilus assembly protein PilP Machinery gene
  CA921_RS04955 pilQ 1073388..1075484 (+) 2097 WP_011215098.1 type IV pilus secretin PilQ Machinery gene
  CA921_RS04960 aroK 1075929..1076456 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=229661 CA921_RS04940 WP_010946663.1 1071642..1072190(+) (pilN) [Legionella pneumophila subsp. pneumophila strain Allentown]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=229661 CA921_RS04940 WP_010946663.1 1071642..1072190(+) (pilN) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment