Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA924_RS14405 Genome accession   NZ_CP021281
Coordinates   3167040..3167699 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3162040..3172699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS14390 - 3163173..3163832 (+) 660 WP_015961724.1 hypothetical protein -
  CA924_RS14395 - 3164000..3165148 (+) 1149 WP_015961725.1 DUF1566 domain-containing protein -
  CA924_RS14400 uvrC 3165172..3167028 (-) 1857 WP_015961726.1 excinuclease ABC subunit UvrC -
  CA924_RS14405 letA 3167040..3167699 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  CA924_RS14410 phhA 3167824..3168642 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  CA924_RS14415 - 3169082..3170179 (+) 1098 WP_015961728.1 competence/damage-inducible protein A -
  CA924_RS14420 cgtA 3170138..3171163 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  CA924_RS14425 rpmA 3171377..3171655 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA924_RS14430 rplU 3171668..3171979 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=229648 CA924_RS14405 WP_011947563.1 3167040..3167699(-) (letA) [Legionella pneumophila subsp. pneumophila strain Flint]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229648 CA924_RS14405 WP_011947563.1 3167040..3167699(-) (letA) [Legionella pneumophila subsp. pneumophila strain Flint]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment