Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CA929_RS12035 Genome accession   NZ_CP021277
Coordinates   2665838..2666542 (+) Length   234 a.a.
NCBI ID   WP_219819312.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-4058     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2660838..2671542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA929_RS12010 - 2662027..2662917 (+) 891 WP_027227357.1 lpg2327 family Dot/Icm T4SS effector -
  CA929_RS12015 - 2663212..2663595 (+) 384 WP_027227358.1 hypothetical protein -
  CA929_RS12020 - 2663789..2664019 (+) 231 WP_027227359.1 exodeoxyribonuclease VII small subunit -
  CA929_RS12025 - 2664000..2664896 (+) 897 WP_027227360.1 polyprenyl synthetase family protein -
  CA929_RS12030 bioC 2664940..2665794 (-) 855 WP_027227361.1 malonyl-ACP O-methyltransferase BioC -
  CA929_RS12035 comFC 2665838..2666542 (+) 705 WP_219819312.1 ComF family protein Machinery gene
  CA929_RS12040 - 2666572..2667645 (-) 1074 WP_027227363.1 site-2 protease family protein -
  CA929_RS12045 - 2667701..2667979 (-) 279 WP_027222429.1 hypothetical protein -
  CA929_RS16690 - 2667997..2668173 (+) 177 WP_162839336.1 hypothetical protein -
  CA929_RS12050 hemA 2668298..2669572 (+) 1275 WP_027227364.1 glutamyl-tRNA reductase -
  CA929_RS12055 prfA 2669556..2670644 (+) 1089 WP_027227365.1 peptide chain release factor 1 -
  CA929_RS12060 prmC 2670637..2671500 (+) 864 WP_027227366.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26939.65 Da        Isoelectric Point: 9.3420

>NTDB_id=229561 CA929_RS12035 WP_219819312.1 2665838..2666542(+) (comFC) [Legionella pneumophila subsp. fraseri strain D-4058]
MLQKFLSITQNLRLPSICTLCNQLHKSQLAICSYCMEYMKQLGPSCQYCAYPLSDDTYLVCGHCIKKRPLFDKAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPQNAFKPDCLIPVPMHPKRLKRRGFNQSVILTKLLARQLNIPYDLYHCR
KVINTASQANLDGEQRRKNLHHAFYVSPVTYEHVMIVDDLLTTGSTANEMAYTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=229561 CA929_RS12035 WP_219819312.1 2665838..2666542(+) (comFC) [Legionella pneumophila subsp. fraseri strain D-4058]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGCTTGCCTTCAATATGTACTCTTTGCAACCAGCTTCACAAAAG
TCAACTTGCAATTTGCTCTTATTGCATGGAGTATATGAAACAACTTGGACCTTCCTGTCAATACTGTGCCTACCCCCTTT
CTGATGATACCTACCTGGTTTGTGGTCACTGCATTAAAAAAAGGCCTCTCTTTGATAAGGCCTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACACCAGTTTAAATACCATAATGGTCTTTATCTGGCCTCATTTCTAAAGCAATTACT
TCTTAATGCCTTGCCACAAAACGCATTTAAACCAGACTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAGCGAA
GGGGATTTAACCAGTCTGTTATATTAACCAAATTATTAGCTCGTCAATTAAACATCCCTTATGACTTATACCATTGCCGA
AAAGTAATCAATACCGCTTCACAAGCCAATCTCGATGGAGAACAACGAAGGAAAAATTTGCATCATGCTTTTTATGTATC
GCCTGTAACTTATGAGCACGTCATGATTGTAGATGACTTATTAACCACAGGAAGCACAGCCAATGAAATGGCATATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGCGCAAGGGCTGTGACTAAAAATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(12-64)

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

89.316

100

0.893
  comFC Legionella pneumophila strain ERS1305867

89.286

83.761

0.748

Multiple sequence alignment