Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA920_RS13545 Genome accession   NZ_CP021269
Coordinates   2992148..2992807 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Bellingham     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987148..2997807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA920_RS13530 - 2988047..2988706 (+) 660 WP_013101910.1 hypothetical protein -
  CA920_RS13535 - 2988874..2990256 (+) 1383 WP_014844754.1 DUF1566 domain-containing protein -
  CA920_RS13540 uvrC 2990280..2992136 (-) 1857 WP_014844755.1 excinuclease ABC subunit UvrC -
  CA920_RS13545 letA 2992148..2992807 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  CA920_RS13550 phhA 2992932..2993750 (-) 819 WP_014844756.1 phenylalanine 4-monooxygenase -
  CA920_RS13555 - 2994194..2995291 (+) 1098 WP_014844757.1 competence/damage-inducible protein A -
  CA920_RS13560 cgtA 2995250..2996275 (-) 1026 WP_014844758.1 Obg family GTPase CgtA -
  CA920_RS13565 rpmA 2996490..2996768 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA920_RS13570 rplU 2996781..2997092 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=229523 CA920_RS13545 WP_011947563.1 2992148..2992807(-) (letA) [Legionella pneumophila subsp. pneumophila strain Bellingham]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229523 CA920_RS13545 WP_011947563.1 2992148..2992807(-) (letA) [Legionella pneumophila subsp. pneumophila strain Bellingham]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGGGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAAGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment