Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA922_RS13875 Genome accession   NZ_CP021268
Coordinates   3042678..3043337 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037678..3048337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS13860 - 3038550..3039209 (+) 660 WP_011947560.1 hypothetical protein -
  CA922_RS13865 - 3039377..3040786 (+) 1410 WP_061563548.1 DUF1566 domain-containing protein -
  CA922_RS13870 uvrC 3040810..3042666 (-) 1857 WP_106141295.1 excinuclease ABC subunit UvrC -
  CA922_RS13875 letA 3042678..3043337 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  CA922_RS13880 phhA 3043462..3044280 (-) 819 WP_061691913.1 phenylalanine 4-monooxygenase -
  CA922_RS13885 - 3044720..3045817 (+) 1098 WP_061691914.1 competence/damage-inducible protein A -
  CA922_RS13890 cgtA 3045776..3046801 (-) 1026 WP_014842696.1 Obg family GTPase CgtA -
  CA922_RS13895 rpmA 3047016..3047294 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA922_RS13900 rplU 3047307..3047618 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=229483 CA922_RS13875 WP_011216518.1 3042678..3043337(-) (letA) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229483 CA922_RS13875 WP_011216518.1 3042678..3043337(-) (letA) [Legionella pneumophila subsp. pneumophila strain Birmingham]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTGGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTGTTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGCGCTATGGGATACCTTACTAAAGAATCAGG
GGCAGAGGAAATGGCTGCAGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTAGGGATTAAAAATGATGTAGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment