Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA922_RS10075 Genome accession   NZ_CP021268
Coordinates   2214749..2215063 (-) Length   104 a.a.
NCBI ID   WP_027220533.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209749..2220063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS10050 - 2210174..2210674 (-) 501 WP_027220529.1 hypothetical protein -
  CA922_RS10055 - 2211166..2212026 (+) 861 WP_027220530.1 polysaccharide deacetylase family protein -
  CA922_RS10060 - 2212144..2213340 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CA922_RS10065 lpp1976 2213450..2214007 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  CA922_RS10070 lpp1977 2214004..2214810 (-) 807 WP_050598614.1 hypothetical protein Machinery gene
  CA922_RS10075 lpp1978 2214749..2215063 (-) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA922_RS10080 hisC 2215223..2216332 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  CA922_RS10085 - 2216369..2216710 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA922_RS10095 secF 2216888..2217805 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  CA922_RS10100 secD 2217818..2219674 (-) 1857 WP_027220537.1 protein translocase subunit SecD -
  CA922_RS10105 yajC 2219696..2220031 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12249.39 Da        Isoelectric Point: 10.0591

>NTDB_id=229476 CA922_RS10075 WP_027220533.1 2214749..2215063(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229476 CA922_RS10075 WP_027220533.1 2214749..2215063(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

100

100

1
  lpp1978 Legionella pneumophila str. Paris

98.077

100

0.981

Multiple sequence alignment