Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   CA922_RS10065 Genome accession   NZ_CP021268
Coordinates   2213450..2214007 (-) Length   185 a.a.
NCBI ID   WP_027220531.1    Uniprot ID   A0AAP9BXV5
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2208450..2219007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS10040 - 2208745..2209284 (-) 540 WP_013101628.1 hypothetical protein -
  CA922_RS10045 - 2209444..2210094 (-) 651 WP_027220528.1 lysoplasmalogenase -
  CA922_RS10050 - 2210174..2210674 (-) 501 WP_027220529.1 hypothetical protein -
  CA922_RS10055 - 2211166..2212026 (+) 861 WP_027220530.1 polysaccharide deacetylase family protein -
  CA922_RS10060 - 2212144..2213340 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CA922_RS10065 lpp1976 2213450..2214007 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  CA922_RS10070 lpp1977 2214004..2214810 (-) 807 WP_050598614.1 hypothetical protein Machinery gene
  CA922_RS10075 lpp1978 2214749..2215063 (-) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA922_RS10080 hisC 2215223..2216332 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  CA922_RS10085 - 2216369..2216710 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA922_RS10095 secF 2216888..2217805 (-) 918 WP_027220536.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21729.13 Da        Isoelectric Point: 6.7381

>NTDB_id=229474 CA922_RS10065 WP_027220531.1 2213450..2214007(-) (lpp1976) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MKKTDSGFILLMTLCITFLMSLLVLASLQQILLQYKALNSQETFHQNFYQLEHWMMRLAHSPLLYAGMDCYLQKDYGANK
IANELVNNKGCLLILNQRKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGEYTIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=229474 CA922_RS10065 WP_027220531.1 2213450..2214007(-) (lpp1976) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGAAAAAAACCGATTCCGGTTTCATTCTGTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATACTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTCGCTCATTCACCGTTATTGTATGCAGGTATGGATTGTTATCTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTAGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAGAAAATACAGATATTTTATTGAGGACCT
GAACGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATATACTATCATGCAACTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila strain ERS1305867

99.459

100

0.995
  lpp1976 Legionella pneumophila str. Paris

98.378

100

0.984

Multiple sequence alignment