Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA923_RS13650 Genome accession   NZ_CP021267
Coordinates   3012252..3012911 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Burlington     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007252..3017911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA923_RS13635 - 3008052..3008711 (+) 660 WP_010948343.1 hypothetical protein -
  CA923_RS13640 - 3008879..3010360 (+) 1482 WP_010948344.1 DUF1566 domain-containing protein -
  CA923_RS13645 uvrC 3010384..3012240 (-) 1857 WP_010948345.1 excinuclease ABC subunit UvrC -
  CA923_RS13650 letA 3012252..3012911 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  CA923_RS13655 phhA 3013036..3013854 (-) 819 WP_010948347.1 phenylalanine 4-monooxygenase -
  CA923_RS13660 - 3014293..3015390 (+) 1098 WP_010948348.1 competence/damage-inducible protein A -
  CA923_RS13665 cgtA 3015349..3016374 (-) 1026 WP_010948349.1 Obg family GTPase CgtA -
  CA923_RS13670 rpmA 3016589..3016867 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA923_RS13675 rplU 3016880..3017191 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=229441 CA923_RS13650 WP_011216518.1 3012252..3012911(-) (letA) [Legionella pneumophila subsp. pneumophila strain Burlington]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229441 CA923_RS13650 WP_011216518.1 3012252..3012911(-) (letA) [Legionella pneumophila subsp. pneumophila strain Burlington]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTAAAAACCCACTCCCCTGATGTCGTATTATTAG
ATATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCAGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGTCTCAGGATTCCCCTTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment