Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CA926_RS05855 Genome accession   NZ_CP021265
Coordinates   1307318..1308646 (+) Length   442 a.a.
NCBI ID   WP_028379343.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302318..1313646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS05835 amrS 1302448..1303524 (+) 1077 WP_028379340.1 AmmeMemoRadiSam system radical SAM enzyme -
  CA926_RS05840 - 1303583..1304002 (+) 420 WP_011213527.1 lpg1171 family Dot/Icm T4SS effector -
  CA926_RS05845 lidL 1304152..1305636 (+) 1485 WP_080274158.1 Dot/Icm type IV secretion system effector LidL -
  CA926_RS05850 - 1305735..1307321 (+) 1587 WP_028379342.1 ATP-binding protein -
  CA926_RS05855 pilR 1307318..1308646 (+) 1329 WP_028379343.1 sigma-54 dependent transcriptional regulator Regulator
  CA926_RS05860 - 1308821..1309066 (+) 246 WP_011213531.1 hypothetical protein -
  CA926_RS05865 - 1309377..1310813 (-) 1437 WP_028379344.1 M48 family metalloprotease -
  CA926_RS05870 ribD 1310876..1311949 (+) 1074 WP_028379345.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CA926_RS05875 ribE 1311934..1312548 (+) 615 WP_028378486.1 riboflavin synthase -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49309.32 Da        Isoelectric Point: 6.9612

>NTDB_id=229335 CA926_RS05855 WP_028379343.1 1307318..1308646(+) (pilR) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MTKSKVLVIDDEPDIRELLTLTLSRMGLTCDAVSDFKQGIEHIKQNYYSLVLTDMRLPDGDGIEIVKFIQKYKPQVPVAV
ITAYGNVEGAVNTLKAGAFDYVSKPIDLKMLRDLVKTALSMQNSPTEKPDEDLLVGESLVMQQLRENIHKLARSQAPVFI
QGASGVGKELVAQLIHANGPRKHKPFIPVNCGAIPGELMESEFFGHKKGSFTGAISDKTGLFVAAHGGTLFLDEIAELPL
AMQVKLLRAIQEKAIKPIGELYEIPVDVRILSASHKNLIEEINVGTFRQDLYYRINVIELRVPTLMERLSDIPCLTEAIL
KKLSKNQNRSLVKINPDCFEILSRYHFPGNVRELENILERAMAMCEGEVIEPSDLHLPRTTITPAVAVPSTSTNLNGYLQ
DQEKELILDALEKTKWNRTAAAQLLGVSFRTLRYRLKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=229335 CA926_RS05855 WP_028379343.1 1307318..1308646(+) (pilR) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGACCAAAAGTAAAGTGCTTGTTATAGATGATGAACCAGATATAAGAGAGTTATTAACTCTTACTTTATCACGCATGGG
TTTAACTTGCGATGCAGTGTCTGACTTTAAGCAAGGCATAGAACATATAAAACAAAATTATTATTCTTTGGTTTTAACCG
ATATGCGTTTACCTGATGGAGATGGTATAGAAATTGTTAAATTCATTCAGAAATACAAACCGCAGGTACCAGTTGCCGTC
ATTACTGCCTATGGAAATGTCGAGGGTGCGGTCAACACTTTAAAGGCGGGTGCATTTGATTACGTATCAAAACCTATAGA
CTTAAAAATGCTTAGAGATCTCGTTAAGACTGCATTATCCATGCAAAACTCACCTACCGAGAAGCCTGATGAAGATCTAC
TGGTTGGTGAAAGTTTGGTAATGCAACAACTTCGTGAAAACATTCATAAATTAGCTCGCAGTCAGGCACCAGTTTTTATT
CAAGGAGCGTCAGGTGTTGGAAAAGAATTGGTTGCTCAGTTGATCCATGCTAATGGTCCCAGAAAGCATAAGCCATTTAT
TCCTGTAAACTGCGGCGCTATACCTGGTGAGTTGATGGAATCAGAGTTTTTTGGCCATAAAAAAGGGAGCTTTACAGGAG
CGATTTCTGATAAAACAGGGTTATTTGTTGCGGCTCATGGTGGCACTTTGTTTCTTGATGAAATCGCTGAACTTCCTCTC
GCCATGCAGGTTAAATTGCTACGTGCAATTCAGGAGAAGGCAATTAAGCCGATAGGCGAGTTATATGAAATTCCAGTGGA
TGTTCGCATTCTAAGTGCGAGTCATAAAAATTTGATTGAGGAAATCAATGTAGGGACATTTCGTCAAGATTTGTATTATC
GAATTAATGTGATTGAATTGCGTGTACCAACTTTAATGGAAAGGCTTTCCGACATTCCTTGTTTGACGGAGGCGATATTA
AAAAAATTATCTAAAAATCAAAATAGAAGCCTTGTTAAAATCAATCCAGATTGTTTTGAAATATTGAGCCGTTATCATTT
TCCAGGAAATGTTAGAGAGTTGGAGAATATCCTTGAGCGTGCCATGGCTATGTGTGAAGGTGAGGTTATAGAACCATCCG
ATTTACATTTGCCAAGAACAACAATAACCCCAGCTGTTGCCGTACCCTCCACGTCAACTAACTTAAATGGTTACCTTCAG
GATCAGGAAAAAGAGTTAATTCTTGATGCGCTTGAGAAAACAAAATGGAACAGAACCGCTGCTGCCCAATTATTAGGTGT
CAGCTTTCGCACTCTCCGTTATCGATTAAAAAAACTGGGACTTGATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(134-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.969

100

0.595
  pilR Acinetobacter baumannii strain A118

48.584

100

0.505

Multiple sequence alignment