Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA928_RS09875 Genome accession   NZ_CP021264
Coordinates   2212368..2212682 (-) Length   104 a.a.
NCBI ID   WP_027229196.1    Uniprot ID   A0A2S6EXS5
Organism   Legionella pneumophila subsp. fraseri strain D-5387     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2207368..2217682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA928_RS09850 - 2207777..2208277 (-) 501 WP_027229191.1 hypothetical protein -
  CA928_RS09855 - 2208769..2209629 (+) 861 WP_027229192.1 polysaccharide deacetylase family protein -
  CA928_RS09860 - 2209763..2210959 (-) 1197 WP_027229193.1 murein transglycosylase A -
  CA928_RS09865 lpp1976 2211069..2211626 (-) 558 WP_027229194.1 hypothetical protein Machinery gene
  CA928_RS09870 lpp1977 2211623..2212366 (-) 744 WP_027229195.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA928_RS09875 lpp1978 2212368..2212682 (-) 315 WP_027229196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA928_RS09880 hisC 2212843..2213952 (+) 1110 WP_027229197.1 histidinol-phosphate transaminase -
  CA928_RS09885 - 2213990..2214331 (+) 342 WP_027229198.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA928_RS09890 secF 2214506..2215423 (-) 918 WP_027229199.1 protein translocase subunit SecF -
  CA928_RS09895 secD 2215436..2217292 (-) 1857 WP_027229200.1 protein translocase subunit SecD -
  CA928_RS09900 yajC 2217314..2217649 (-) 336 WP_027229201.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12391.56 Da        Isoelectric Point: 9.5369

>NTDB_id=229310 CA928_RS09875 WP_027229196.1 2212368..2212682(-) (lpp1978) [Legionella pneumophila subsp. fraseri strain D-5387]
MNKQKGFTLMEILMSLMLMTTVVLMLVEQQLKTRDLINHLIWRIHGSQFLDQVDEALYISENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKNQSIIRSYDLDVN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229310 CA928_RS09875 WP_027229196.1 2212368..2212682(-) (lpp1978) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGAACAAGCAAAAGGGTTTCACCCTAATGGAAATACTTATGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATTTAATCAATCATCTTATATGGAGAATTCACGGTTCCCAATTTTTAGATCAAGTAG
ATGAAGCATTATATATCAGTGAGAATAGATTACCTCTGCCACCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAGAAAAACCAGTCAATTATTCGTTCCTATGATCTGGACGTTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6EXS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

90.385

100

0.904
  lpp1978 Legionella pneumophila str. Paris

90.385

100

0.904

Multiple sequence alignment