Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   CA928_RS09870 Genome accession   NZ_CP021264
Coordinates   2211623..2212366 (-) Length   247 a.a.
NCBI ID   WP_027229195.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5387     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206623..2217366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA928_RS09845 - 2207045..2207695 (-) 651 WP_027229190.1 lysoplasmalogenase -
  CA928_RS09850 - 2207777..2208277 (-) 501 WP_027229191.1 hypothetical protein -
  CA928_RS09855 - 2208769..2209629 (+) 861 WP_027229192.1 polysaccharide deacetylase family protein -
  CA928_RS09860 - 2209763..2210959 (-) 1197 WP_027229193.1 murein transglycosylase A -
  CA928_RS09865 lpp1976 2211069..2211626 (-) 558 WP_027229194.1 hypothetical protein Machinery gene
  CA928_RS09870 lpp1977 2211623..2212366 (-) 744 WP_027229195.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA928_RS09875 lpp1978 2212368..2212682 (-) 315 WP_027229196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA928_RS09880 hisC 2212843..2213952 (+) 1110 WP_027229197.1 histidinol-phosphate transaminase -
  CA928_RS09885 - 2213990..2214331 (+) 342 WP_027229198.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA928_RS09890 secF 2214506..2215423 (-) 918 WP_027229199.1 protein translocase subunit SecF -
  CA928_RS09895 secD 2215436..2217292 (-) 1857 WP_027229200.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 29012.72 Da        Isoelectric Point: 9.4014

>NTDB_id=229309 CA928_RS09870 WP_027229195.1 2211623..2212366(-) (lpp1977) [Legionella pneumophila subsp. fraseri strain D-5387]
MRRQTGFGLSEMLISLFLASIITITLTQIYIRSKPQYLKAQELLEINFDLLWISDLLSNSIRKAGFTPCLSVEKLKTYDS
RHAEREIINFQIENMPQAQLRINRMSDVYTEVINFMSPTQVVIQEPVISNIKHPLIISDCRHAEVHTVSKIDKLTNGYQI
TLKKPLKFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPLIHEFYVARRIVKQRPVLDFTIGSDKEKFRKI
SVSVRNL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=229309 CA928_RS09870 WP_027229195.1 2211623..2212366(-) (lpp1977) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGAGAAGACAAACAGGATTTGGTTTATCTGAGATGTTAATTAGTCTTTTCCTGGCAAGTATTATAACGATTACTCTTAC
TCAGATTTATATAAGAAGCAAACCTCAATACCTAAAGGCACAAGAACTGTTAGAAATTAATTTTGATTTGCTGTGGATTA
GCGATTTACTAAGCAACAGTATTAGAAAAGCTGGATTTACTCCGTGTTTAAGTGTCGAGAAATTAAAAACTTATGATTCT
CGACATGCAGAGAGAGAAATAATTAATTTTCAAATTGAAAATATGCCGCAAGCTCAGCTTCGTATCAATAGAATGAGTGA
TGTTTATACGGAAGTGATAAATTTCATGAGCCCAACACAAGTAGTGATTCAAGAGCCAGTAATATCAAATATAAAACATC
CATTAATTATTTCTGACTGCAGGCATGCCGAAGTACATACAGTCTCGAAAATAGATAAGCTCACTAATGGATATCAGATT
ACTTTAAAAAAACCATTGAAGTTCCGGTACGATGAAATTGCTTACCTGGGAGAGTGGCTGGAAGAAACATGGTTTACTAA
ACAAAATGAAAAGGGTGAAAAGACATTGCATTACAAATTGTTTCAAACAGAAGAATTAAGCCCATTAATTCATGAGTTTT
ATGTTGCCAGACGTATTGTCAAACAGAGGCCAGTATTAGATTTTACAATTGGTAGCGATAAGGAAAAATTCCGTAAGATC
AGTGTATCGGTACGAAACTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

88.664

100

0.887
  lpp1977 Legionella pneumophila strain ERS1305867

88.664

100

0.887

Multiple sequence alignment