Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA930_RS13860 Genome accession   NZ_CP021263
Coordinates   3080259..3080918 (-) Length   219 a.a.
NCBI ID   WP_028378979.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-3137     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3075259..3085918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA930_RS13845 - 3076406..3077065 (+) 660 WP_027229077.1 hypothetical protein -
  CA930_RS13850 - 3077112..3078368 (+) 1257 WP_060871594.1 DUF1566 domain-containing protein -
  CA930_RS13855 uvrC 3078391..3080247 (-) 1857 WP_027229076.1 excinuclease ABC subunit UvrC -
  CA930_RS13860 letA 3080259..3080918 (-) 660 WP_028378979.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  CA930_RS13865 phhA 3081043..3081861 (-) 819 WP_027229074.1 phenylalanine 4-monooxygenase -
  CA930_RS13870 - 3082309..3083406 (+) 1098 WP_027229073.1 competence/damage-inducible protein A -
  CA930_RS13875 cgtA 3083365..3084390 (-) 1026 WP_027229072.1 Obg family GTPase CgtA -
  CA930_RS13880 rpmA 3084608..3084886 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA930_RS13885 rplU 3084899..3085210 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24529.47 Da        Isoelectric Point: 5.1572

>NTDB_id=229275 CA930_RS13860 WP_028378979.1 3080259..3080918(-) (letA) [Legionella pneumophila subsp. fraseri strain D-3137]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPSDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229275 CA930_RS13860 WP_028378979.1 3080259..3080918(-) (letA) [Legionella pneumophila subsp. fraseri strain D-3137]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGCGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACCAACCCAAATATTAAAGTCATAGCC
GTTACAGCCATTTGTTCAGATCCTCTTCCCACTCGAGTATTGCAATTAGGTGCGATGGGATATCTTACTAAAGAATCAGG
GGCTGAGGAAATGGCCGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAGATGG
CAATTAATAGCCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACAAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATACAGGAT
GTTTGAAAAATTGGGAATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAGTG
ATTTATCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.087

100

0.991
  letA Legionella pneumophila strain ERS1305867

99.087

100

0.991

Multiple sequence alignment