Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | CA930_RS03510 | Genome accession | NZ_CP021263 |
| Coordinates | 726817..727521 (-) | Length | 234 a.a. |
| NCBI ID | WP_027228452.1 | Uniprot ID | - |
| Organism | Legionella pneumophila subsp. fraseri strain D-3137 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 721817..732521
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA930_RS03495 | - | 724692..725204 (-) | 513 | WP_027228449.1 | pilus assembly protein | - |
| CA930_RS03500 | - | 725201..726268 (-) | 1068 | WP_027228450.1 | PilW family protein | - |
| CA930_RS03505 | pilV | 726265..726804 (-) | 540 | WP_027228451.1 | type IV pilus modification protein PilV | - |
| CA930_RS03510 | fimT | 726817..727521 (-) | 705 | WP_027228452.1 | GspH/FimT family pseudopilin | Machinery gene |
| CA930_RS03515 | - | 727735..728595 (-) | 861 | WP_027228453.1 | polysaccharide deacetylase family protein | - |
| CA930_RS03520 | - | 728771..730120 (-) | 1350 | WP_080272249.1 | lpg0634 family Dot/Icm T4SS effector | - |
| CA930_RS03525 | - | 730414..731895 (+) | 1482 | WP_027228455.1 | glycosyltransferase family 39 protein | - |
Sequence
Protein
Download Length: 234 a.a. Molecular weight: 24859.41 Da Isoelectric Point: 7.5611
>NTDB_id=229244 CA930_RS03510 WP_027228452.1 726817..727521(-) (fimT) [Legionella pneumophila subsp. fraseri strain D-3137]
MNKVIRESQRFTVRNIATLLFCVDTSVLPTQSNIAQNKETKIIYNDLCKDSFDTEIPLSSNPLSIAGFTLVELLVTLSVF
AIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPAAGTPTLL
KTHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTVCDNRGNAFARSAMVLATGFVQSGATPGQAVWNNGALNCP
MNKVIRESQRFTVRNIATLLFCVDTSVLPTQSNIAQNKETKIIYNDLCKDSFDTEIPLSSNPLSIAGFTLVELLVTLSVF
AIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPAAGTPTLL
KTHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTVCDNRGNAFARSAMVLATGFVQSGATPGQAVWNNGALNCP
Nucleotide
Download Length: 705 bp
>NTDB_id=229244 CA930_RS03510 WP_027228452.1 726817..727521(-) (fimT) [Legionella pneumophila subsp. fraseri strain D-3137]
TTGAATAAAGTGATAAGGGAATCACAAAGGTTCACTGTGCGCAATATCGCTACTTTATTATTTTGTGTGGACACAAGTGT
GTTGCCCACACAATCTAATATAGCACAAAATAAAGAAACAAAAATAATATACAATGACCTTTGCAAAGACAGCTTTGATA
CTGAAATCCCCCTTAGCAGTAACCCTCTATCCATAGCAGGATTCACGCTAGTTGAATTATTAGTCACCCTATCTGTTTTC
GCCATCATCTTAACTCTAATTGTGCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTCACT
GGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCCGTCAATGTGGCAGTATGTCCGTTAGGTTCACCGG
GTTCAACGGCCTGTGGCGCCAACTGGAGCTCAGGATGGATAGTAGTAACCCAACCCGCGGCCGGCACACCCACTCTTTTA
AAAACTCACCAAACCTCAGTGAATGACCCTGTTATCACATCTAATGTATCCAGTGTTGTTTTTGACCCGCATGGATTATC
AACTACCCAAAGTAACTTCACTGTGTGTGATAACCGAGGAAATGCGTTTGCCCGATCAGCAATGGTTTTAGCTACCGGAT
TTGTCCAATCTGGAGCAACACCCGGCCAGGCTGTCTGGAATAATGGGGCTCTAAACTGCCCTTAG
TTGAATAAAGTGATAAGGGAATCACAAAGGTTCACTGTGCGCAATATCGCTACTTTATTATTTTGTGTGGACACAAGTGT
GTTGCCCACACAATCTAATATAGCACAAAATAAAGAAACAAAAATAATATACAATGACCTTTGCAAAGACAGCTTTGATA
CTGAAATCCCCCTTAGCAGTAACCCTCTATCCATAGCAGGATTCACGCTAGTTGAATTATTAGTCACCCTATCTGTTTTC
GCCATCATCTTAACTCTAATTGTGCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTCACT
GGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCCGTCAATGTGGCAGTATGTCCGTTAGGTTCACCGG
GTTCAACGGCCTGTGGCGCCAACTGGAGCTCAGGATGGATAGTAGTAACCCAACCCGCGGCCGGCACACCCACTCTTTTA
AAAACTCACCAAACCTCAGTGAATGACCCTGTTATCACATCTAATGTATCCAGTGTTGTTTTTGACCCGCATGGATTATC
AACTACCCAAAGTAACTTCACTGTGTGTGATAACCGAGGAAATGCGTTTGCCCGATCAGCAATGGTTTTAGCTACCGGAT
TTGTCCAATCTGGAGCAACACCCGGCCAGGCTGTCTGGAATAATGGGGCTCTAAACTGCCCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Legionella pneumophila strain Lp02 |
90.638 |
100 |
0.91 |