Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA931_RS13840 Genome accession   NZ_CP021262
Coordinates   3056910..3057569 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain U8W (D-7160)     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3051910..3062569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA931_RS13825 - 3053191..3053850 (+) 660 WP_027222794.1 hypothetical protein -
  CA931_RS13830 - 3053897..3055018 (+) 1122 WP_061773165.1 DUF1566 domain-containing protein -
  CA931_RS13835 uvrC 3055042..3056898 (-) 1857 WP_027222795.1 excinuclease ABC subunit UvrC -
  CA931_RS13840 letA 3056910..3057569 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  CA931_RS13845 phhA 3057694..3058512 (-) 819 WP_027222796.1 phenylalanine 4-monooxygenase -
  CA931_RS13850 - 3058950..3060047 (+) 1098 WP_027222797.1 competence/damage-inducible protein A -
  CA931_RS13855 cgtA 3060006..3061031 (-) 1026 WP_027222798.1 Obg family GTPase CgtA -
  CA931_RS13860 rpmA 3061250..3061528 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA931_RS13865 rplU 3061541..3061852 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=229233 CA931_RS13840 WP_011216518.1 3056910..3057569(-) (letA) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229233 CA931_RS13840 WP_011216518.1 3056910..3057569(-) (letA) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTTGTTGCAGATGCTGAAAGCGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTTGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCCATTTGCTCAGACCCTCTTCCCACTCGAGTATTGCAATTAGGTGCTATGGGATATCTTACTAAAGAATCCGG
GGCTGAGGAAATGGCCGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAGATGG
CAATTAATAGCCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATC
ACAAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACTATCAATGGTTATCGATACAGGAT
GTTTGAAAAATTGGGAATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTATCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment