Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA931_RS10350 Genome accession   NZ_CP021262
Coordinates   2262759..2263073 (-) Length   104 a.a.
NCBI ID   WP_027222173.1    Uniprot ID   A0AAX2IXJ9
Organism   Legionella pneumophila subsp. pascullei strain U8W (D-7160)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2257759..2268073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA931_RS10325 - 2258168..2258668 (-) 501 WP_027222168.1 hypothetical protein -
  CA931_RS10330 - 2259160..2260020 (+) 861 WP_027222169.1 polysaccharide deacetylase family protein -
  CA931_RS10335 - 2260154..2261350 (-) 1197 WP_027222170.1 murein transglycosylase A -
  CA931_RS10340 lpp1976 2261460..2262017 (-) 558 WP_027222171.1 hypothetical protein Machinery gene
  CA931_RS10345 lpp1977 2262014..2262757 (-) 744 WP_027222172.1 hypothetical protein Machinery gene
  CA931_RS10350 lpp1978 2262759..2263073 (-) 315 WP_027222173.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA931_RS10355 hisC 2263234..2264343 (+) 1110 WP_027222174.1 histidinol-phosphate transaminase -
  CA931_RS10360 - 2264381..2264722 (+) 342 WP_027222175.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA931_RS10365 secF 2264906..2265823 (-) 918 WP_027222176.1 protein translocase subunit SecF -
  CA931_RS10370 secD 2265836..2267692 (-) 1857 WP_027222177.1 protein translocase subunit SecD -
  CA931_RS10375 yajC 2267714..2268049 (-) 336 WP_027222178.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12319.50 Da        Isoelectric Point: 10.1757

>NTDB_id=229226 CA931_RS10350 WP_027222173.1 2262759..2263073(-) (lpp1978) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
MNKQKGFTLMEVLMSLMLMTTVVLMLVEQRLKTRDLINHLIWRIHGSQFLDQVDEALYIGENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKSQSIIRSYNLDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229226 CA931_RS10350 WP_027222173.1 2262759..2263073(-) (lpp1978) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
ATGAACAAGCAAAAGGGTTTCACCCTAATGGAAGTACTAATGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
AGAGCAACGGTTGAAAACCAGAGATTTGATCAATCATCTTATCTGGCGAATTCACGGTTCCCAATTTTTAGATCAAGTAG
ATGAAGCATTATATATTGGTGAGAATAGATTACCCCTGCCGCCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAACGTTACGTGGTTTAAAAAAAGCCAATCAATTATTCGCTCTTATAATCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila str. Paris

90.385

100

0.904
  lpp1978 Legionella pneumophila strain ERS1305867

90.385

100

0.904

Multiple sequence alignment