Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   CA931_RS03300 Genome accession   NZ_CP021262
Coordinates   685867..686316 (-) Length   149 a.a.
NCBI ID   WP_027223681.1    Uniprot ID   A0AAX2ISP7
Organism   Legionella pneumophila subsp. pascullei strain U8W (D-7160)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 680867..691316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA931_RS03280 - 681112..681504 (-) 393 WP_027223677.1 membrane protein -
  CA931_RS03285 - 681641..682018 (+) 378 WP_027223678.1 hypothetical protein -
  CA931_RS03290 - 682218..683525 (+) 1308 WP_027223679.1 tetratricopeptide repeat protein -
  CA931_RS03295 comEC 683558..685789 (-) 2232 WP_027223680.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CA931_RS03300 pilE 685867..686316 (-) 450 WP_027223681.1 type IV pilin protein Machinery gene
  CA931_RS03305 - 686328..689837 (-) 3510 WP_027223682.1 PilC/PilY family type IV pilus protein -
  CA931_RS03310 - 689850..690362 (-) 513 WP_027223683.1 pilus assembly protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16374.62 Da        Isoelectric Point: 8.3282

>NTDB_id=229202 CA931_RS03300 WP_027223681.1 685867..686316(-) (pilE) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
MLSNRHCMKNNRMRQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTQNGYYTINISNLTATTYTLTATPVGTQATDTKCASMSINQANVKTAVDSSANAQPECWNPS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=229202 CA931_RS03300 WP_027223681.1 685867..686316(-) (pilE) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
ATGCTTAGTAATCGACATTGTATGAAGAATAACCGCATGAGACAATCTGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAGTCCCGTCGTGCCGATGCTC
ATGCTACATTGACACAAGATCAAATCATTTTAGAACGCTGTTACTCACAGAATTTTTCCTATGCTGCAGCGTGTGGTGCC
TTACCAGCATTTCCGCAAACAACGCAGAATGGATACTATACTATCAATATTTCAAACCTGACAGCCACAACCTATACCTT
AACCGCAACCCCTGTCGGAACCCAAGCCACTGATACCAAGTGCGCCAGCATGTCAATCAATCAAGCCAATGTAAAAACAG
CGGTAGATTCCTCTGCTAATGCCCAACCAGAATGCTGGAATCCCAGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

93.96

100

0.94

  pilE Legionella pneumophila strain ERS1305867

93.96

100

0.94


Multiple sequence alignment