Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CA931_RS00700 Genome accession   NZ_CP021262
Coordinates   156385..157077 (+) Length   230 a.a.
NCBI ID   WP_027223240.1    Uniprot ID   A0AAX2IS38
Organism   Legionella pneumophila subsp. pascullei strain U8W (D-7160)     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 151385..162077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA931_RS00680 - 152004..152180 (-) 177 WP_080273224.1 dodecin domain-containing protein -
  CA931_RS00685 - 152358..154826 (+) 2469 WP_027223237.1 hypothetical protein -
  CA931_RS00690 dapB 154924..155655 (-) 732 WP_027223238.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CA931_RS00695 - 155842..156027 (-) 186 WP_027223239.1 hypothetical protein -
  CA931_RS00700 rocC 156385..157077 (+) 693 WP_027223240.1 ProQ/FINO family protein Regulator
  CA931_RS00705 - 157078..158148 (+) 1071 WP_027223241.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25742.66 Da        Isoelectric Point: 10.7030

>NTDB_id=229198 CA931_RS00700 WP_027223240.1 156385..157077(+) (rocC) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLQGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVSGKVVTHSHVNNQQSTISSIKPINS
IDSHPEPVLPVYPLRSSAYTSQNTAMQSAKPSSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETAE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=229198 CA931_RS00700 WP_027223240.1 156385..157077(+) (rocC) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTTATCAATAAAGCACAAAAAAATCAATCCAAACGTGCACGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTTCCTGAGGCATTTGATAATTCTTTGCGTATCCGGCCATTAAAGATTGGTATTA
TGTCTGACATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGAGAAGCGGTTGTTCTT
TTTACCCGTCGTCTCGATTATCTGGCTTGCTTAAAGGCTCGTGAAGTCCGTATCGATTTGCAAGGAAATCCAGTAGCGGA
GGTTACGGAAGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGTGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTAAGTGGAAAAGTAGTTACTCATTCGCATGTCAATAATCAACAGAGTACAATTTCCAGCATTAAGCCAATCAATTCA
ATTGACTCTCATCCTGAGCCTGTTTTGCCAGTATATCCCCTCAGAAGTTCTGCGTATACATCACAAAATACGGCCATGCA
ATCCGCCAAGCCATCATCCGTAGTAGTCAAACATAAAGCGCCAAAGCAATATGATCCGGATGCCGTAGCTCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAGAAGGAAACGGCAGAATAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

90

100

0.9

Multiple sequence alignment