Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA934_RS13600 Genome accession   NZ_CP021259
Coordinates   3012403..3013062 (-) Length   219 a.a.
NCBI ID   WP_028378979.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007403..3018062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS13585 - 3008771..3009388 (+) 618 WP_238143861.1 hypothetical protein -
  CA934_RS13590 - 3009435..3010511 (+) 1077 WP_106225763.1 DUF1566 domain-containing protein -
  CA934_RS13595 uvrC 3010535..3012391 (-) 1857 WP_106225764.1 excinuclease ABC subunit UvrC -
  CA934_RS13600 letA 3012403..3013062 (-) 660 WP_028378979.1 two-component system response regulator LetA Regulator
  CA934_RS13605 phhA 3013187..3014005 (-) 819 WP_106225765.1 phenylalanine 4-monooxygenase -
  CA934_RS13610 - 3014453..3015550 (+) 1098 WP_027229073.1 competence/damage-inducible protein A -
  CA934_RS13615 cgtA 3015509..3016534 (-) 1026 WP_106225766.1 Obg family GTPase CgtA -
  CA934_RS13620 rpmA 3016752..3017030 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA934_RS13625 rplU 3017043..3017354 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24529.47 Da        Isoelectric Point: 5.1572

>NTDB_id=229192 CA934_RS13600 WP_028378979.1 3012403..3013062(-) (letA) [Legionella pneumophila strain D-7708]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPSDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229192 CA934_RS13600 WP_028378979.1 3012403..3013062(-) (letA) [Legionella pneumophila strain D-7708]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGCGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACCAACCCAAATATTAAAGTCATAGCC
GTTACAGCCATTTGTTCAGATCCTCTTCCCACTCGAGTATTGCAATTAGGTGCGATGGGATATCTTACTAAAGAATCAGG
GGCTGAGGAAATGGCCGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAGATGG
CAATTAATAGCCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACAAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATACAGGAT
GTTTGAAAAATTGGGAATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCATCCCAGTG
ATTTATCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.087

100

0.991
  letA Legionella pneumophila strain ERS1305867

99.087

100

0.991

Multiple sequence alignment