Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CA934_RS11895 Genome accession   NZ_CP021259
Coordinates   2634679..2635383 (+) Length   234 a.a.
NCBI ID   WP_219819312.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2629679..2640383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS11870 - 2630868..2631758 (+) 891 WP_027227357.1 lpg2327 family Dot/Icm T4SS effector -
  CA934_RS11875 - 2632053..2632436 (+) 384 WP_027227358.1 hypothetical protein -
  CA934_RS11880 - 2632630..2632860 (+) 231 WP_027227359.1 exodeoxyribonuclease VII small subunit -
  CA934_RS11885 - 2632841..2633737 (+) 897 WP_027227360.1 polyprenyl synthetase family protein -
  CA934_RS11890 bioC 2633781..2634635 (-) 855 WP_027227361.1 malonyl-ACP O-methyltransferase BioC -
  CA934_RS11895 comFC 2634679..2635383 (+) 705 WP_219819312.1 ComF family protein Machinery gene
  CA934_RS11900 - 2635413..2636486 (-) 1074 WP_027227363.1 site-2 protease family protein -
  CA934_RS11905 - 2636542..2636820 (-) 279 WP_027222429.1 hypothetical protein -
  CA934_RS15655 - 2636838..2637014 (+) 177 WP_162839336.1 hypothetical protein -
  CA934_RS11910 hemA 2637139..2638413 (+) 1275 WP_027227364.1 glutamyl-tRNA reductase -
  CA934_RS11915 prfA 2638397..2639485 (+) 1089 WP_028377815.1 peptide chain release factor 1 -
  CA934_RS11920 prmC 2639478..2640341 (+) 864 WP_106225623.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26939.65 Da        Isoelectric Point: 9.3420

>NTDB_id=229188 CA934_RS11895 WP_219819312.1 2634679..2635383(+) (comFC) [Legionella pneumophila strain D-7708]
MLQKFLSITQNLRLPSICTLCNQLHKSQLAICSYCMEYMKQLGPSCQYCAYPLSDDTYLVCGHCIKKRPLFDKAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPQNAFKPDCLIPVPMHPKRLKRRGFNQSVILTKLLARQLNIPYDLYHCR
KVINTASQANLDGEQRRKNLHHAFYVSPVTYEHVMIVDDLLTTGSTANEMAYTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=229188 CA934_RS11895 WP_219819312.1 2634679..2635383(+) (comFC) [Legionella pneumophila strain D-7708]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGCTTGCCTTCAATATGTACTCTTTGCAACCAGCTTCACAAAAG
TCAACTTGCAATTTGCTCTTATTGCATGGAGTATATGAAACAACTTGGACCTTCCTGTCAATACTGTGCCTACCCCCTTT
CTGATGATACCTACCTGGTTTGTGGTCACTGCATTAAAAAAAGGCCTCTCTTTGATAAGGCCTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACACCAGTTTAAATACCATAATGGTCTTTATCTGGCCTCATTTCTAAAGCAATTACT
TCTTAATGCCTTGCCACAAAACGCATTTAAACCAGACTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAGCGAA
GGGGATTTAACCAGTCCGTTATATTAACCAAATTATTAGCTCGTCAATTAAACATCCCTTATGACTTATACCATTGCCGA
AAAGTAATCAATACCGCTTCACAAGCCAATCTCGATGGAGAACAACGAAGGAAAAATTTGCATCATGCTTTTTATGTATC
GCCTGTAACTTATGAGCACGTCATGATTGTAGATGACTTATTAACCACAGGAAGCACAGCCAATGAAATGGCATATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGCGCAAGGGCTGTGACTAAAAATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(12-64)

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

89.316

100

0.893
  comFC Legionella pneumophila strain ERS1305867

89.286

83.761

0.748

Multiple sequence alignment