Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RL06_RS06945 Genome accession   NZ_CP026953
Coordinates   1279074..1280186 (+) Length   370 a.a.
NCBI ID   WP_016170584.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274074..1285186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL06_RS06920 (RL06_06920) rnpA 1274337..1274690 (-) 354 WP_001789343.1 ribonuclease P protein component -
  RL06_RS06925 (RL06_06925) rpmH 1274811..1274948 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  RL06_RS06930 (RL06_06930) dnaA 1275679..1277040 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  RL06_RS06935 (RL06_06935) dnaN 1277318..1278451 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  RL06_RS06940 (RL06_06940) yaaA 1278832..1279077 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  RL06_RS06945 (RL06_06945) recF 1279074..1280186 (+) 1113 WP_016170584.1 DNA replication/repair protein RecF Machinery gene
  RL06_RS06950 (RL06_06950) gyrB 1280196..1282130 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RL06_RS06955 (RL06_06955) gyrA 1282167..1284836 (+) 2670 WP_000819096.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42383.37 Da        Isoelectric Point: 6.4362

>NTDB_id=229176 RL06_RS06945 WP_016170584.1 1279074..1280186(+) (recF) [Staphylococcus aureus strain FDAARGOS_48]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGVDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=229176 RL06_RS06945 WP_016170584.1 1279074..1280186(+) (recF) [Staphylococcus aureus strain FDAARGOS_48]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCGTGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.062

100

0.495

Multiple sequence alignment