Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA935_RS13855 Genome accession   NZ_CP021258
Coordinates   3088602..3089261 (-) Length   219 a.a.
NCBI ID   WP_028378979.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5744     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083602..3094261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA935_RS13840 - 3084749..3085408 (+) 660 WP_027229077.1 hypothetical protein -
  CA935_RS13845 - 3085455..3086711 (+) 1257 WP_060871594.1 DUF1566 domain-containing protein -
  CA935_RS13850 uvrC 3086734..3088590 (-) 1857 WP_027229076.1 excinuclease ABC subunit UvrC -
  CA935_RS13855 letA 3088602..3089261 (-) 660 WP_028378979.1 two-component system response regulator LetA Regulator
  CA935_RS13860 phhA 3089386..3090204 (-) 819 WP_027229074.1 phenylalanine 4-monooxygenase -
  CA935_RS13865 - 3090652..3091749 (+) 1098 WP_027229073.1 competence/damage-inducible protein A -
  CA935_RS13870 cgtA 3091708..3092733 (-) 1026 WP_027229072.1 Obg family GTPase CgtA -
  CA935_RS13875 rpmA 3092951..3093229 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  CA935_RS13880 rplU 3093242..3093553 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24529.47 Da        Isoelectric Point: 5.1572

>NTDB_id=229150 CA935_RS13855 WP_028378979.1 3088602..3089261(-) (letA) [Legionella pneumophila subsp. fraseri strain D-5744]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPSDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=229150 CA935_RS13855 WP_028378979.1 3088602..3089261(-) (letA) [Legionella pneumophila subsp. fraseri strain D-5744]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGCGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACCAACCCAAATATTAAAGTCATAGCC
GTTACAGCCATTTGTTCAGATCCTCTTCCCACTCGAGTATTGCAATTAGGTGCGATGGGATATCTTACTAAAGAATCAGG
GGCTGAGGAAATGGCCGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAGATGG
CAATTAATAGCCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACAAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATACAGGAT
GTTTGAAAAATTGGGAATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAGTG
ATTTATCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.087

100

0.991
  letA Legionella pneumophila strain ERS1305867

99.087

100

0.991

Multiple sequence alignment