Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   B9N48_RS12160 Genome accession   NZ_CP021169
Coordinates   2344338..2345141 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339338..2350141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS12140 glpQB 2340483..2341214 (-) 732 WP_086344061.1 glycerophosphodiester phosphodiesterase -
  B9N48_RS12145 yqiI 2341293..2341907 (-) 615 WP_003230285.1 N-acetylmuramoyl-L-alanine amidase -
  B9N48_RS12150 - 2341925..2342221 (-) 297 WP_086344612.1 hypothetical protein -
  B9N48_RS20635 - 2342529..2342681 (+) 153 WP_130572550.1 hypothetical protein -
  B9N48_RS12155 yqiG 2342754..2343872 (+) 1119 WP_086344062.1 NADH-dependent flavin oxidoreductase -
  B9N48_RS12160 spo0A 2344338..2345141 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  B9N48_RS12170 spoIVB 2345417..2346697 (-) 1281 WP_086344063.1 SpoIVB peptidase -
  B9N48_RS12175 recN 2346872..2348602 (-) 1731 WP_086344064.1 DNA repair protein RecN Machinery gene
  B9N48_RS12180 argR 2348639..2349088 (-) 450 WP_003230265.1 arginine repressor ArgR -
  B9N48_RS12185 yqxC 2349186..2350031 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=228768 B9N48_RS12160 WP_003226427.1 2344338..2345141(-) (spo0A) [Bacillus subtilis strain TLO3]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=228768 B9N48_RS12160 WP_003226427.1 2344338..2345141(-) (spo0A) [Bacillus subtilis strain TLO3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment